CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82312	Canola	nucleus	89.33	89.33
Bra001733.1-P	Field mustard	nucleus	81.44	76.64
CDX99268	Canola	nucleus	72.39	70.27
AT3G19090.2	Thale cress	nucleus	73.09	65.35
CDX92302	Canola	nucleus	64.27	62.53
PGSC0003DMT400066353	Potato	nucleus	33.64	51.24
KRH50235	Soybean	nucleus	46.64	50.38
VIT_03s0063g01050.t01	Wine grape	nucleus	48.03	50.24
KRH71184	Soybean	nucleus	45.94	49.01
PGSC0003DMT400083493	Potato	nucleus	43.16	45.26
Solyc01g108310.2.1	Tomato	nucleus	41.53	44.53
Solyc10g050550.1.1	Tomato	nucleus	40.6	42.48
Os07t0102500-01	Rice	nucleus	40.14	39.5
Os03t0566500-01	Rice	nucleus, plastid	38.05	38.23
GSMUA_Achr4P23770_001	Banana	nucleus	40.6	37.23
TraesCS2B01G285700.1	Wheat	nucleus	37.35	36.1
Zm00001d032397_P001	Maize	nucleus	34.57	36.08
TraesCS2D01G265900.1	Wheat	nucleus	37.35	36.02
TraesCS2A01G256900.1	Wheat	nucleus	37.35	35.7
KXG38156	Sorghum	nucleus	37.35	34.26
EER97821	Sorghum	nucleus	40.14	33.27
Zm00001d018613_P004	Maize	nucleus	38.28	32.67
CDY17896	Canola	nucleus	32.02	30.46
CDX79791	Canola	nucleus	33.87	29.2
CDY03229	Canola	nucleus	26.22	29.05
CDY33465	Canola	nucleus	26.22	28.9
CDY35155	Canola	nucleus	25.99	28.64
CDY68074	Canola	nucleus	25.29	27.95

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	GO:A0A078GC99	UniProt:A0A078GC99	InterPro:Ataxin-2_C
EnsemblPlants:CDY22991	ProteinID:CDY22991	ProteinID:CDY22991.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030529	GO:GO:1990904
EnsemblPlantsGene:GSBRNA2T00021415001	InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	InterPro:La_HTH
InterPro:Lupus_La	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF05383	PFAM:PF07145	PRINTS:PR00302
PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF62	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928	UniParc:UPI0004EDAEAC	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

BnaC03g40780DBnaC03g40780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GC99]

Coordinates

chrLK032138:-:484735..487773

Molecular Weight (calculated)

47606.6 Da

IEP (calculated)

10.291

GRAVY (calculated)

-0.631

Length

431 amino acids

Sequence
(BLAST)

001: MAQMQREPVE SVTKETTEKK ILDGGGGGGS SASKASSFKF NAQAPEFVPR SHATALTPQR RRRSYRRFSV VGLDLHPVHH QNIHDPTAAF YVSNPVVQFP
101: ANQNLSSSSK SLLSDDLRLK IVKQVEYQFT DMSLLANKSI SKHINKDPEG YVPISYIAST KKIKALTSHH HLVALALRSS SKLVVSEDNK KVKRKIPFTD
201: RDREELQGRT VVVENLPDDH SYQNLEKIFG VVGNVTAIRI CHPPESNTSR PKGDYLMSNK IHALIEYDHT VVADKAVEKL NDERNWRKGL RVRLLLRCSP
301: KSVLKNRRNL DGILIDDEYP SYESGEDSPR LHLTEQQLDN DGDENNIGGL WGKGRGKGRG RSPRSYALGG GGGGHSFGIG LGLGLSIGSM SRSLGLHESS
401: SPKTATKGPR MPDGTRGFTM GRGKTFYLTL T

Best Arabidopsis Sequence Match ( AT3G19090.1 )
(BLAST)

001: MAQMQREEVE SVTTEKKRLD GGGGSSGAQA TAFKFNAQAP EFVPRSHTTA PAPQVSPVSG YFYPCFHYNG GCIGGCGGGV CGGGGTGVGT QSSDWIYVGG
101: GDPTAQHQHV HDPAAAFYIS NPAVQFPASQ NSSSSSKNLL SDDLRLKIVK QVEYQFTDMS LLANESISKH ISKDPEGYVP VSYIASTKKI KALTSNHHLV
201: SLALRSSSKL VVSEDGKKVK RTSQFTDRDR EELQGRTVVA ENLPDDHSYQ NLEKIFGVVG NVKAIRICHP PESNSSRPKG DFLMSNKIHA LIEYDNTVIA
301: DKAVEKLNDE RNWRKGLRVR LLLRCSPKSV LKNRRNFDGI LIDDELPSYE SGEDSPRLHL TESQLDNDGD DNNVGGLWGK GRGKGRGRSP RSYAVGGGGR
401: SFGIGLGVSL GIPSLGSHES SSPKTATKGP RMPDGTRGFT MGRGKPSISL SPNNL

Arabidopsis Description

RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLZ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.