CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 2
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032397_P001	Maize	nucleus	60.43	68.77
Os03t0566500-01	Rice	nucleus, plastid	58.94	64.57
PGSC0003DMT400066353	Potato	nucleus	27.23	45.23
EER97821	Sorghum	nucleus	49.79	45.0
VIT_03s0063g01050.t01	Wine grape	nucleus	39.15	44.66
GSMUA_Achr4P23770_001	Banana	nucleus	41.91	41.91
Solyc01g108310.2.1	Tomato	nucleus	35.74	41.79
KRH71184	Soybean	nucleus	35.74	41.58
KRH50235	Soybean	nucleus	34.47	40.6
CDX92302	Canola	nucleus	37.23	39.5
Bra022387.1-P	Field mustard	nucleus	37.23	39.5
CDX99268	Canola	nucleus	36.81	38.96
PGSC0003DMT400083493	Potato	nucleus	33.19	37.96
CDX82312	Canola	nucleus	34.68	37.82
CDY22991	Canola	nucleus	34.26	37.35
Bra001733.1-P	Field mustard	nucleus	35.96	36.9
Solyc10g050550.1.1	Tomato	nucleus	32.13	36.65
AT3G19090.2	Thale cress	nucleus	35.96	35.06
EES15258	Sorghum	nucleus	28.09	30.21
EES08246	Sorghum	nucleus	29.57	28.9
EES16897	Sorghum	nucleus	29.57	28.43
KXG33403	Sorghum	nucleus	21.91	22.84

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	UniProt:A0A1B6QJR5	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0030529	GO:GO:1990904	InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388
EnsemblPlants:KXG38156	ProteinID:KXG38156	ProteinID:KXG38156.1	InterPro:La_HTH	InterPro:Lupus_La	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF05383	PRINTS:PR00302	PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792
PANTHER:PTHR22792:SF62	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00715	EnsemblPlantsGene:SORBI_3001G188100	SUPFAM:SSF46785
SUPFAM:SSF54928	UniParc:UPI0002206FEE	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:16604255..16607372

Molecular Weight (calculated)

50449.2 Da

IEP (calculated)

9.823

GRAVY (calculated)

-0.573

Length

470 amino acids

Sequence
(BLAST)

001: MLTHGDSPPH TLDRNTIQIA GHTRTRTRTP MHQSSSTGEE ATMAQDGCES SSKASSSLAG SSGCSMPSFR LNVHAREFVP VPPAVVASPL TAAAGYYSPF
101: LQLSGGGGGG LAADWNFFAE PDPTSSSFLP DFGHGGEIAG AAGISGYPNP KGASPADVAQ KIIKQVEYQF SDTNLVANDF LTKIMNKDPE GYVPLSVISS
201: WKKIKAMGVT NQLLVTALRT SEKLVVSDDG KKVRRAQPFT ERHKEELQCR MVIAENLPHD STRNSLEKIF GIIGSVKNIR ICHPQEPSSA RSSKSDANTL
301: VSNKLHALIE YETSHQADRA VDKLNDERNW RRGLRVRPVL RRSPKAATRL KRPDLDHLAA SDEERSPQSQ GSSSDSLTAA HFPDNSQQEE DQHQHVGAKK
401: PWGRGRGRPP QTLHSSAHAA GAPGHLDSLA ASPRHAAQGP RMPDGTRGFT MGRGRPAAPA VASAAVVRVV

Best Arabidopsis Sequence Match ( AT3G19090.1 )
(BLAST)

001: MAQMQREEVE SVTTEKKRLD GGGGSSGAQA TAFKFNAQAP EFVPRSHTTA PAPQVSPVSG YFYPCFHYNG GCIGGCGGGV CGGGGTGVGT QSSDWIYVGG
101: GDPTAQHQHV HDPAAAFYIS NPAVQFPASQ NSSSSSKNLL SDDLRLKIVK QVEYQFTDMS LLANESISKH ISKDPEGYVP VSYIASTKKI KALTSNHHLV
201: SLALRSSSKL VVSEDGKKVK RTSQFTDRDR EELQGRTVVA ENLPDDHSYQ NLEKIFGVVG NVKAIRICHP PESNSSRPKG DFLMSNKIHA LIEYDNTVIA
301: DKAVEKLNDE RNWRKGLRVR LLLRCSPKSV LKNRRNFDGI LIDDELPSYE SGEDSPRLHL TESQLDNDGD DNNVGGLWGK GRGKGRGRSP RSYAVGGGGR
401: SFGIGLGVSL GIPSLGSHES SSPKTATKGP RMPDGTRGFT MGRGKPSISL SPNNL

Arabidopsis Description

RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLZ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.