CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES12460
KXG35258

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43970.1	EES12460	AT1G49760.1	21798944
AT2G43970.1	KXG35258	AT1G49760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007279_P001	Maize	nucleus	83.78	85.74
Os11t0248200-01	Rice	nucleus, plasma membrane	54.05	73.45
TraesCS4D01G084200.1	Wheat	nucleus	67.98	67.84
TraesCS4B01G087000.1	Wheat	nucleus	66.32	66.18
TraesCS4A01G229400.1	Wheat	nucleus	58.84	58.59
HORVU4Hr1G014800.1	Barley	nucleus	58.0	57.76
VIT_05s0094g01400.t01	Wine grape	mitochondrion	36.8	54.46
EES16897	Sorghum	nucleus	54.68	53.78
GSMUA_Achr3P19230_001	Banana	nucleus	48.65	51.43
GSMUA_Achr6P18240_001	Banana	nucleus	48.86	51.2
VIT_09s0002g07980.t01	Wine grape	cytosol	7.07	50.0
KRG97304	Soybean	nucleus	43.04	44.23
KRH69036	Soybean	nucleus	43.66	44.12
EES15258	Sorghum	nucleus	38.67	42.56
CDY17896	Canola	nucleus	39.92	42.38
GSMUA_Achr2P11420_001	Banana	mitochondrion	42.83	41.78
CDX79791	Canola	nucleus	42.2	40.6
Bra004795.1-P	Field mustard	nucleus	41.16	40.0
Solyc08g015650.2.1	Tomato	nucleus	37.42	39.47
Solyc12g019000.1.1	Tomato	nucleus	37.84	38.48
PGSC0003DMT400064931	Potato	nucleus	36.59	37.85
AT2G43970.1	Thale cress	nucleus	41.79	36.88
PGSC0003DMT400075259	Potato	nucleus	37.42	34.75
Solyc12g096640.1.1	Tomato	nucleus, plastid	36.59	34.31
KXG38156	Sorghum	nucleus	28.9	29.57
EER97821	Sorghum	nucleus	30.56	28.27
KXG33403	Sorghum	nucleus	24.53	26.16

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:8076903	InterPro:Ataxin-2_C	UniProt:C5Y7R2
EnsemblPlants:EES08246	ProteinID:EES08246	ProteinID:EES08246.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030529	GO:GO:1990904
InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	InterPro:La_HTH	InterPro:La_like_plant_RRM
InterPro:Lupus_La	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF05383	PFAM:PF07145	PRINTS:PR00302	PFscan:PS50102
PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF81	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00715
EnsemblPlantsGene:SORBI_3005G084400	SUPFAM:SSF46785	SUPFAM:SSF54928	unigene:Sbi.21558	UniParc:UPI0001A86614	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	RefSeq:XP_002449258.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:11470770..11488080

Molecular Weight (calculated)

52124.8 Da

IEP (calculated)

7.321

GRAVY (calculated)

-0.839

Length

481 amino acids

Sequence
(BLAST)

001: MSLQEAADPP PSATDERPGG LPRSGSASRL NAQAPEFVPR AAAAVPPPPP PQTVVRLFAP PPPPAAFFVA APPPPPPPFE YYAAVAAGGG ARFGPPPAEQ
101: EPEAEQPPRD GSFDDPVPKI RKQVEYYFSD INLATTEHLM RFISKDPEGY VPMSVVAGFK KIKALVQSNS MLASALRTSS KLVVSDDGAR VKREQPFTES
201: DLEELQARIV VAENLPDDHC YQNLMRLFSA VGSVKTIRTC YPQTPNGTGP ATNRSAKLDM LFANKLHAFV EYDSIEDAAR AIVELNDERN WRSGLRVRLL
301: STCMTKGGKG KKGGHESDGY GEDENVSTSD QPNDKHLEGT PQMSDVPGEH MTEDSTGDMG RGRGRGRGRG GRGRGRGYHQ QNNNQHHQNH HQHYQNSSHH
401: SNRSSTHPVG TPPSGHSVKI EQPSGHPVKI EQQQEEAAQS QPLTAANKQP PGPRMPDGTR GFSMGRGKPQ ALTPRVSESE P

Best Arabidopsis Sequence Match ( AT2G43970.1 )
(BLAST)

001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE

Arabidopsis Description

LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.