Factsheet for HORVU4Hr1G014800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G087390.3
HORVU5Hr1G050560.1
HORVU7Hr1G063970.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43970.1	HORVU2Hr1G087390.3	AT1G49760.1	21798944
AT2G43970.1	HORVU5Hr1G050560.1	AT1G49760.1	21798944
AT2G43970.1	HORVU7Hr1G063970.1	AT1G49760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G229400.1	Wheat	nucleus	95.24	95.24
TraesCS4B01G087000.1	Wheat	nucleus	72.46	72.61
Os11t0248200-01	Rice	nucleus, plasma membrane	51.55	70.34
TraesCS4D01G084200.1	Wheat	nucleus	69.36	69.5
EES08246	Sorghum	nucleus	57.76	58.0
Zm00001d007279_P001	Maize	nucleus	56.11	57.66
HORVU5Hr1G029110.1	Barley	nucleus	52.38	54.76
VIT_05s0094g01400.t01	Wine grape	mitochondrion	36.65	54.46
VIT_09s0002g07980.t01	Wine grape	cytosol	7.45	52.94
GSMUA_Achr3P19230_001	Banana	nucleus	46.58	49.45
GSMUA_Achr6P18240_001	Banana	nucleus	46.17	48.58
KRG97304	Soybean	nucleus	41.82	43.16
KRH69036	Soybean	nucleus	41.82	42.44
GSMUA_Achr2P11420_001	Banana	mitochondrion	43.27	42.39
CDY17896	Canola	nucleus	39.54	42.16
HORVU7Hr1G056460.1	Barley	nucleus	33.95	42.05
Bra004795.1-P	Field mustard	nucleus	42.24	41.21
Solyc12g019000.1.1	Tomato	nucleus	39.75	40.59
Solyc08g015650.2.1	Tomato	nucleus	37.89	40.13
CDX79791	Canola	nucleus	40.99	39.6
PGSC0003DMT400064931	Potato	nucleus	36.65	38.06
AT2G43970.1	Thale cress	nucleus	42.86	37.98
PGSC0003DMT400075259	Potato	nucleus	39.34	36.68
Solyc12g096640.1.1	Tomato	nucleus, plastid	36.85	34.7
HORVU3Hr1G072800.1	Barley	nucleus	26.29	25.1

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	EMBL:AK374668	InterPro:Ataxin-2_C	UniProt:F2EEU2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030529	GO:GO:1990904	EnsemblPlantsGene:HORVU4Hr1G014800	EnsemblPlants:HORVU4Hr1G014800.1	InterPro:IPR000504
InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	InterPro:La_HTH	InterPro:La_like_plant_RRM	InterPro:Lupus_La
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF05383	PFAM:PF07145	PRINTS:PR00302	PFscan:PS50102	PFscan:PS50961
PANTHER:PTHR22792	PANTHER:PTHR22792:SF81	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00715	SUPFAM:SSF46785
SUPFAM:SSF54928	UniParc:UPI0002008E93	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2EEU2]

Coordinates

chrchr4H:+:55174350..55184015

Molecular Weight (calculated)

52105.7 Da

IEP (calculated)

7.431

GRAVY (calculated)

-0.761

Length

483 amino acids

Sequence
(BLAST)

001: MSQQDPAAGE ELPGGLSRSS SASRLNAQAP EFVPRVAAAP PPPAPVQPVI HVFAAPPPPP PASFFAAGPP PPRPPFEFYA AVGAAAAGFV AVPEHEMGAE
101: QAVPPPPPPA QAHQQGRELI TDDVLHKITK QVEYYFSDIN LATTEHLMRF ITKDPEGYVP MSVVASFKKI KALVQSSSML ASALRTSSKL VVSEDGNRVK
201: RGQPFTESDL EELQSRIVVA ENLPDDHCYQ NLMKIFSSAG SVKTIRTCYP QTPNGSGPVT NRSAKLDMLF ANKLHAFVEY ETVEDAEKAI VVLNDERNWR
301: SGLRVRLLNS CMAKGGKGKK GGHETDVHGE EDVSTSDQPN DKHSEEISQP SDAIGEHVSE ESTGDMGRGR GRGRGRGGRG RGRGYHNNHN NNQYHHNNHP
401: QQQHHYHHQN SNNQGNNRSG AHPVGTPPSS HPVKAEQQQT QSSPPAGANK QLPGPRMPDG TRGFSMGRGM PQTSTPSVST SEP

Best Arabidopsis Sequence Match ( AT2G43970.1 )
(BLAST)

001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE

Arabidopsis Description

LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.