Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_03s0063g00070.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G43970.1 | VIT_03s0063g00070.t01 | AT1G49760.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_05s0094g01400.t01 | Wine grape | mitochondrion | 58.82 | 12.31 |
| Os11t0248200-01 | Rice | nucleus, plasma membrane | 51.47 | 9.89 |
| GSMUA_Achr6P18240_001 | Banana | nucleus | 57.35 | 8.5 |
| HORVU7Hr1G056460.1 | Barley | nucleus | 48.53 | 8.46 |
| TraesCS7A01G265700.1 | Wheat | nucleus | 48.53 | 8.4 |
| GSMUA_Achr3P19230_001 | Banana | nucleus | 55.88 | 8.35 |
| Zm00001d020113_P001 | Maize | cytosol | 48.53 | 8.29 |
| EES15258 | Sorghum | nucleus | 52.94 | 8.24 |
| TraesCS7D01G269000.1 | Wheat | nucleus | 47.06 | 8.14 |
| TraesCS7B01G166700.1 | Wheat | nucleus | 47.06 | 8.14 |
| Zm00001d031707_P001 | Maize | nucleus | 51.47 | 8.14 |
| CDY17896 | Canola | nucleus | 52.94 | 7.95 |
| Solyc12g019000.1.1 | Tomato | nucleus | 54.41 | 7.82 |
| HORVU5Hr1G029110.1 | Barley | nucleus | 51.47 | 7.58 |
| PGSC0003DMT400064931 | Potato | nucleus | 51.47 | 7.53 |
| TraesCS5D01G126900.3 | Wheat | nucleus | 51.47 | 7.53 |
| TraesCS5A01G115200.1 | Wheat | nucleus | 51.47 | 7.53 |
| VIT_03s0063g01050.t01 | Wine grape | nucleus | 45.59 | 7.52 |
| Os08t0542900-01 | Rice | nucleus | 47.06 | 7.49 |
| TraesCS4D01G084200.1 | Wheat | nucleus | 52.94 | 7.47 |
| TraesCS4B01G087000.1 | Wheat | nucleus | 52.94 | 7.47 |
| Solyc08g015650.2.1 | Tomato | nucleus | 50.0 | 7.46 |
| TraesCS4A01G229400.1 | Wheat | nucleus | 52.94 | 7.45 |
| HORVU4Hr1G014800.1 | Barley | nucleus | 52.94 | 7.45 |
| TraesCS5B01G121000.2 | Wheat | nucleus | 50.0 | 7.33 |
| Bra004795.1-P | Field mustard | nucleus | 52.94 | 7.27 |
| Zm00001d007279_P001 | Maize | nucleus | 50.0 | 7.23 |
| CDX79791 | Canola | nucleus | 52.94 | 7.2 |
| PGSC0003DMT400075259 | Potato | nucleus | 54.41 | 7.14 |
| GSMUA_Achr2P11420_001 | Banana | mitochondrion | 51.47 | 7.1 |
| EES08246 | Sorghum | nucleus | 50.0 | 7.07 |
| Solyc12g096640.1.1 | Tomato | nucleus, plastid | 52.94 | 7.02 |
| EES16897 | Sorghum | nucleus | 47.06 | 6.54 |
| AT2G43970.1 | Thale cress | nucleus | 51.47 | 6.42 |
| Zm00001d023987_P001 | Maize | nucleus | 45.59 | 6.33 |
| Os12t0225100-01 | Rice | nucleus | 14.71 | 4.12 |
| VIT_10s0003g03190.t01 | Wine grape | nucleus | 20.59 | 4.09 |
Protein Annotations
| ArrayExpress:VIT_09s0002g07980 | EMBL:AM476505 | EMBL:FN596494 | EnsemblPlants:VIT_09s0002g07980.t01 | EnsemblPlantsGene:VIT_09s0002g07980 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0046872 | PANTHER:PTHR22792 | PANTHER:PTHR22792:SF52 | ProteinID:CAN81628 | ProteinID:CAN81628.1 |
| ProteinID:CCB59665 | ProteinID:CCB59665.1 | UniParc:UPI000210AA5B | UniProt:F6HXJ5 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr9:+:8527540..8528013
Molecular Weight (calculated)
7631.0 Da
IEP (calculated)
4.194
GRAVY (calculated)
-0.374
Length
68 amino acids
Sequence
(BLAST)
(BLAST)
1: MEELQSRIVV AENLPEDHCH QNLMKIFSTV GSVETIRTYE WLDNLTSDKS DGGEYLVQSA DMSKILGG
001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVTELSE AGNWRSGLKV RLMLKHQTKE PKQGQGRGRK GHDADVEHEE DDATTSEQQP
401: IEKQSDDCSG EWDTHMQEQP IGEDQGNEKA AGQRKGRNRG RGKGRGRGQP HQNQNQNNNH SHNQNHNHNG RGNHHHHHHH QVGTQPSNNP MNNMEQPGMG
501: KQQPPGPRMP DGTRGFSMGR GKPVMVQAE
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVTELSE AGNWRSGLKV RLMLKHQTKE PKQGQGRGRK GHDADVEHEE DDATTSEQQP
401: IEKQSDDCSG EWDTHMQEQP IGEDQGNEKA AGQRKGRNRG RGKGRGRGQP HQNQNQNNNH SHNQNHNHNG RGNHHHHHHH QVGTQPSNNP MNNMEQPGMG
501: KQQPPGPRMP DGTRGFSMGR GKPVMVQAE
Arabidopsis Description
LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.