Factsheet for VIT_10s0003g03190.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01
VIT_17s0000g07580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46250.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166
AT5G46250.1	VIT_17s0000g07580.t01	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019729_P001	Maize	nucleus	15.2	57.78
Solyc02g070550.2.1	Tomato	nucleus	53.51	48.93
KRH21060	Soybean	nucleus	54.97	47.0
KRH11196	Soybean	nucleus	55.26	46.67
PGSC0003DMT400054517	Potato	nucleus	52.92	45.94
Bra017566.1-P	Field mustard	nucleus	50.0	44.19
CDY03229	Canola	nucleus	50.0	43.96
Bra025027.1-P	Field mustard	nucleus	50.0	43.73
CDY33465	Canola	nucleus	50.0	43.73
CDY68074	Canola	nucleus	48.54	42.56
CDY35155	Canola	nucleus	47.37	41.43
AT5G46250.1	Thale cress	nucleus	50.58	41.0
VIT_05s0094g01400.t01	Wine grape	mitochondrion	32.75	34.46
GSMUA_Achr1P13840_001	Banana	nucleus, plastid	45.61	34.14
TraesCS3A01G293900.1	Wheat	nucleus	46.2	32.24
KXG33403	Sorghum	nucleus	41.52	31.49
TraesCS3D01G293700.1	Wheat	nucleus	43.86	31.12
TraesCS3B01G328600.1	Wheat	nucleus	44.15	30.82
HORVU3Hr1G072800.1	Barley	nucleus	44.44	30.04
VIT_03s0063g01050.t01	Wine grape	nucleus	35.67	29.61
Zm00001d043418_P136	Maize	nucleus	39.47	29.35
VIT_09s0002g07980.t01	Wine grape	cytosol	4.09	20.59

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100250312	wikigene:100250312	Gene3D:3.30.70.330	MapMan:35.1	ProteinID:CBI30861
ProteinID:CBI30861.3	UniProt:D7TK39	EMBL:FN595992	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030529	GO:GO:1990904
InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	EntrezGene:LOC100250312	wikigene:LOC100250312
InterPro:La_HTH	InterPro:La_like_plant_RRM	InterPro:Lupus_La	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF05383
PRINTS:PR00302	PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF52	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928	UniParc:UPI0001BE3485	ArrayExpress:VIT_10s0003g03190
EnsemblPlantsGene:VIT_10s0003g03190	EnsemblPlants:VIT_10s0003g03190.t01	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_002276730	RefSeq:XP_002276730.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:-:5345788..5357859

Molecular Weight (calculated)

37923.7 Da

IEP (calculated)

8.724

GRAVY (calculated)

-0.907

Length

342 amino acids

Sequence
(BLAST)

001: MESYEISSPP HDPPFSAPGS PPPSDDTHLS ANDALLADDI RGKIIKQVEY YFSDENLPTD KYLMNLLKKD KNGFVPIAVI ASFRKMKKLT QDIQLIVAAL
101: RESSQLVVSS DGKKVKRLHP LSLTEVKDSK ICTVLIENLP EDHSTENIQR IFGAAGNIKK ICIHDPYATE ESTKDSRVEK LISGKLHAIV DYETVEAAER
201: AVATLNNEQD WRNGMRVKLL HKQMGKYGQR RKGWKGSDME KNSSVGPAHP AGDEENNSSE RHDETPDEED GEHLTKEKNG PRGRNRGRSR GQKYRCMNGQ
301: GHGTLSSSYG AEGSKPPPGP KMPDGTRGFT MGRGRPPVSR PN

Best Arabidopsis Sequence Match ( AT5G46250.1 )
(BLAST)

001: MSSLPLRSGE KMESPSISDA VPLHAPEDAT ADFSQPQSPL HEVDSFPVTE SSDDVVVNVS EIPNLSPSDD DFDHERNSGE DRDQDHGENP VETDGVVVPI
101: DELNQKIIRQ VEYYFSDENL PTDKFLLNAM KRNKKGFVPI STIATFHKMK KLTRDHALIV SALKESSFLV VSADEKKVKR LSPLPEIRDP KIFTVLVENL
201: PEDHSNENIR EIFGKAGSIK SVSICDPNAV EESEKGGKKE NFIRTRLHAF VEYETVEAAE KAAATLNNEQ DWRNGLRVKL LEQAAGKFAQ RRPARREVDK
301: EKDTTGRVHD QTGGEKNKKT REHQNHRLHH SDNPADDDGG NHQKDKNGNK GRVVGQGRRQ NHQGGNGIGH GTASSSSHPN YHPVEVSKRP PGPRMPDGTR
401: GFTMGRGKAI PPPTSTQTSH EV

Arabidopsis Description

LARP6ALa-related protein 6A [Source:UniProtKB/Swiss-Prot;Acc:Q94A38]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.