Factsheet for GSMUA_Achr1P13840_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P15100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46250.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019729_P001	Maize	nucleus	11.6	58.89
VIT_10s0003g03190.t01	Wine grape	nucleus	34.14	45.61
Solyc02g070550.2.1	Tomato	nucleus	31.29	38.24
KRH11196	Soybean	nucleus	32.17	36.3
PGSC0003DMT400054517	Potato	nucleus	30.85	35.79
TraesCS3D01G293700.1	Wheat	nucleus	37.64	35.68
KXG33403	Sorghum	nucleus	34.79	35.26
KRH21060	Soybean	nucleus	30.85	35.25
CDY03229	Canola	nucleus	29.76	34.96
Bra025027.1-P	Field mustard	nucleus	29.32	34.27
CDY33465	Canola	nucleus	29.32	34.27
Bra017566.1-P	Field mustard	nucleus	28.88	34.11
TraesCS3A01G293900.1	Wheat	nucleus	36.54	34.08
Zm00001d043418_P136	Maize	nucleus	34.14	33.91
CDY35155	Canola	nucleus	28.88	33.76
TraesCS3B01G328600.1	Wheat	nucleus	36.1	33.67
CDY68074	Canola	nucleus	28.45	33.33
HORVU3Hr1G072800.1	Barley	nucleus	36.32	32.81
AT5G46250.1	Thale cress	nucleus	29.1	31.52
GSMUA_Achr3P19230_001	Banana	nucleus	26.7	26.81
GSMUA_Achr2P11420_001	Banana	mitochondrion	27.57	25.56
GSMUA_Achr6P18240_001	Banana	nucleus	25.6	25.49
GSMUA_Achr4P23770_001	Banana	nucleus	24.29	23.62

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030529	GO:GO:1990904
EnsemblPlantsGene:GSMUA_Achr1G13840_001	EnsemblPlants:GSMUA_Achr1P13840_001	EnsemblPlants:GSMUA_Achr1T13840_001	InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677
InterPro:IPR036388	InterPro:La_HTH	InterPro:Lupus_La	UniProt:M0RZP2	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF05383	PRINTS:PR00302	PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF52
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928
UniParc:UPI0002964F2B	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_3.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr1G13840_001]

Coordinates

chr1:+:10551954..10559928

Molecular Weight (calculated)

50401.7 Da

IEP (calculated)

6.624

GRAVY (calculated)

-0.660

Length

457 amino acids

Sequence
(BLAST)

001: MIKRTIVYLF FLDSKQIWPG PFPQTLTLTI MEPRSYKPGG RSPWEMETQE RPPSSPPPHP PPSSRPPLPF PDVVPPLADA SAGGVTQGAM EDPVVDPSAV
101: DLGCDPQEGT GDSEIDPLLE VDAFPDAPED LILEEAEAAP SGPAVLSDEL RDQIVRQVEY YFSDENLPTD KFLLKFIKKD KKGYVPIAVI ASFRRMKKLV
201: QDLSLIEAAL RTSSQLVVSE DGKKVRRLNP LPVVATTEAK SRTILVENLP DDRSEENMQR IFGKLGKIVK ITLHDPRSVD KSASNWKSGA TISSKVHALV
301: EYETVDAAAS AVSSLNDEKN WRSGMRVELL LKRMGKYGLV PKGRKATSVE KSNSAQVDEP TADREKSSLD NHEELPTTEE GEQGKGVRRN RYKSRGRGQV
401: RQSDNGHGHG RNPPASAVDF PHKPVQGPRM PDGTRGFSFG RGKPAISDHK PDQHELF

Best Arabidopsis Sequence Match ( AT5G46250.1 )
(BLAST)

001: MSSLPLRSGE KMESPSISDA VPLHAPEDAT ADFSQPQSPL HEVDSFPVTE SSDDVVVNVS EIPNLSPSDD DFDHERNSGE DRDQDHGENP VETDGVVVPI
101: DELNQKIIRQ VEYYFSDENL PTDKFLLNAM KRNKKGFVPI STIATFHKMK KLTRDHALIV SALKESSFLV VSADEKKVKR LSPLPEIRDP KIFTVLVENL
201: PEDHSNENIR EIFGKAGSIK SVSICDPNAV EESEKGGKKE NFIRTRLHAF VEYETVEAAE KAAATLNNEQ DWRNGLRVKL LEQAAGKFAQ RRPARREVDK
301: EKDTTGRVHD QTGGEKNKKT REHQNHRLHH SDNPADDDGG NHQKDKNGNK GRVVGQGRRQ NHQGGNGIGH GTASSSSHPN YHPVEVSKRP PGPRMPDGTR
401: GFTMGRGKAI PPPTSTQTSH EV

Arabidopsis Description

LARP6ALa-related protein 6A [Source:UniProtKB/Swiss-Prot;Acc:Q94A38]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.