Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017566.1-P | Field mustard | nucleus | 58.29 | 63.57 |
| CDY33465 | Canola | nucleus | 56.4 | 60.87 |
| CDY35155 | Canola | nucleus | 56.16 | 60.61 |
| CDY03229 | Canola | nucleus | 55.69 | 60.41 |
| Bra025027.1-P | Field mustard | nucleus | 55.69 | 60.1 |
| CDY68074 | Canola | nucleus | 53.79 | 58.21 |
| Zm00001d019729_P001 | Maize | nucleus | 11.14 | 52.22 |
| VIT_10s0003g03190.t01 | Wine grape | nucleus | 41.0 | 50.58 |
| Solyc02g070550.2.1 | Tomato | nucleus | 40.28 | 45.45 |
| PGSC0003DMT400054517 | Potato | nucleus | 39.1 | 41.88 |
| KRH11196 | Soybean | nucleus | 39.34 | 40.99 |
| KRH21060 | Soybean | nucleus | 38.39 | 40.5 |
| GSMUA_Achr1P13840_001 | Banana | nucleus, plastid | 31.52 | 29.1 |
| TraesCS3D01G293700.1 | Wheat | nucleus | 31.52 | 27.59 |
| TraesCS3A01G293900.1 | Wheat | nucleus | 31.99 | 27.55 |
| TraesCS3B01G328600.1 | Wheat | nucleus | 31.75 | 27.35 |
| KXG33403 | Sorghum | nucleus | 28.91 | 27.05 |
| Zm00001d043418_P136 | Maize | nucleus | 29.38 | 26.96 |
| HORVU3Hr1G072800.1 | Barley | nucleus | 31.52 | 26.28 |
| AT3G19090.2 | Thale cress | nucleus | 27.96 | 24.48 |
| AT2G43970.1 | Thale cress | nucleus | 26.78 | 20.73 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:834667 | ProteinID:AED95357.1 | ProteinID:AED95358.1 |
| ProteinID:AED95359.1 | ArrayExpress:AT5G46250 | EnsemblPlantsGene:AT5G46250 | RefSeq:AT5G46250 | TAIR:AT5G46250 | RefSeq:AT5G46250-TAIR-G |
| EnsemblPlants:AT5G46250.1 | TAIR:AT5G46250.1 | EMBL:AY050403 | Unigene:At.9180 | ProteinID:BAB11080.1 | EMBL:BT000588 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006396 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030529 | GO:GO:1990904 |
| InterPro:IPR000504 | InterPro:IPR006630 | InterPro:IPR012677 | InterPro:IPR036388 | InterPro:La_HTH | InterPro:La_like_plant_RRM |
| InterPro:Lupus_La | RefSeq:NP_001078721.1 | RefSeq:NP_568660.3 | RefSeq:NP_851141.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFAM:PF05383 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000256 |
| PO:PO:0000262 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PRINTS:PR00302 | PFscan:PS50102 | PFscan:PS50961 | PANTHER:PTHR22792 | PANTHER:PTHR22792:SF52 |
| UniProt:Q94A38 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SMART:SM00715 | SUPFAM:SSF46785 |
| SUPFAM:SSF54928 | UniParc:UPI00000AC164 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : |
Description
LARP6ALa-related protein 6A [Source:UniProtKB/Swiss-Prot;Acc:Q94A38]
Coordinates
chr5:+:18755280..18758333
Molecular Weight (calculated)
46844.4 Da
IEP (calculated)
6.561
GRAVY (calculated)
-0.952
Length
422 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSLPLRSGE KMESPSISDA VPLHAPEDAT ADFSQPQSPL HEVDSFPVTE SSDDVVVNVS EIPNLSPSDD DFDHERNSGE DRDQDHGENP VETDGVVVPI
101: DELNQKIIRQ VEYYFSDENL PTDKFLLNAM KRNKKGFVPI STIATFHKMK KLTRDHALIV SALKESSFLV VSADEKKVKR LSPLPEIRDP KIFTVLVENL
201: PEDHSNENIR EIFGKAGSIK SVSICDPNAV EESEKGGKKE NFIRTRLHAF VEYETVEAAE KAAATLNNEQ DWRNGLRVKL LEQAAGKFAQ RRPARREVDK
301: EKDTTGRVHD QTGGEKNKKT REHQNHRLHH SDNPADDDGG NHQKDKNGNK GRVVGQGRRQ NHQGGNGIGH GTASSSSHPN YHPVEVSKRP PGPRMPDGTR
401: GFTMGRGKAI PPPTSTQTSH EV
101: DELNQKIIRQ VEYYFSDENL PTDKFLLNAM KRNKKGFVPI STIATFHKMK KLTRDHALIV SALKESSFLV VSADEKKVKR LSPLPEIRDP KIFTVLVENL
201: PEDHSNENIR EIFGKAGSIK SVSICDPNAV EESEKGGKKE NFIRTRLHAF VEYETVEAAE KAAATLNNEQ DWRNGLRVKL LEQAAGKFAQ RRPARREVDK
301: EKDTTGRVHD QTGGEKNKKT REHQNHRLHH SDNPADDDGG NHQKDKNGNK GRVVGQGRRQ NHQGGNGIGH GTASSSSHPN YHPVEVSKRP PGPRMPDGTR
401: GFTMGRGKAI PPPTSTQTSH EV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.