CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytoskeleton, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03376
KRH42483
KRH54462
KRH57009
KRH58580
KRH63457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46250.1	KRH42483	AT2G01950.1	19000166
AT5G46250.1	KRH58580	AT2G01950.1	19000166
AT5G46250.1	KRH03376	AT3G48100.1	18642946
AT5G46250.1	KRH54462	AT3G48100.1	18642946
AT5G46250.1	KRH57009	AT3G48100.1	18642946
AT5G46250.1	KRH63457	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11196	Soybean	nucleus	76.0	75.06
VIT_10s0003g03190.t01	Wine grape	nucleus	47.0	54.97
Zm00001d019729_P001	Maize	nucleus	11.75	52.22
Solyc02g070550.2.1	Tomato	nucleus	45.5	48.66
PGSC0003DMT400054517	Potato	nucleus	44.5	45.18
CDY03229	Canola	nucleus	42.0	43.19
Bra017566.1-P	Field mustard	nucleus	41.75	43.15
CDY35155	Canola	nucleus	41.25	42.2
Bra025027.1-P	Field mustard	nucleus	38.5	39.39
CDY33465	Canola	nucleus	38.5	39.39
CDY68074	Canola	nucleus	38.0	38.97
AT5G46250.1	Thale cress	nucleus	40.5	38.39
TraesCS3D01G293700.1	Wheat	nucleus	39.0	32.37
KXG33403	Sorghum	nucleus	36.0	31.93
Zm00001d043418_P136	Maize	nucleus	36.0	31.3
TraesCS3B01G328600.1	Wheat	nucleus	38.0	31.02
GSMUA_Achr1P13840_001	Banana	nucleus, plastid	35.25	30.85
HORVU3Hr1G072800.1	Barley	nucleus	39.0	30.83
TraesCS3A01G293900.1	Wheat	nucleus	37.75	30.82
KRH50235	Soybean	nucleus	28.75	28.82
KRH71184	Soybean	nucleus	28.75	28.47
KRG97304	Soybean	nucleus	30.75	26.28
KRH69036	Soybean	nucleus	29.25	24.58

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100788145	Gene3D:3.30.70.330	MapMan:35.1	EMBL:ACUP02008336	EnsemblPlantsGene:GLYMA_13G217600
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030529	GO:GO:1990904	UniProt:I1M1E7	InterPro:IPR000504	InterPro:IPR006630
InterPro:IPR012677	InterPro:IPR036388	EnsemblPlants:KRH21060	ProteinID:KRH21060	ProteinID:KRH21060.1	InterPro:La_HTH
InterPro:La_like_plant_RRM	InterPro:Lupus_La	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF05383	PRINTS:PR00302
PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF52	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928	UniParc:UPI000233C08C	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:33056816..33061330

Molecular Weight (calculated)

44603.6 Da

IEP (calculated)

6.618

GRAVY (calculated)

-1.007

Length

400 amino acids

Sequence
(BLAST)

001: MEGGEEVLPS ATATSAATGN PTASPPPLAD LVGAPDLAAA SDDVVTQPEI HALISDEEHD HEHEHDDDLE HEHDQHEHDH HHEDRDDHAA VAAVSLEDLK
101: LKIIKQAEYY FSDENLPTDK YLLGFVKRNK EGFVPVSVIA SFRKIKKLTR DHAFIVAALK ESSLLVVSGD GRRVKRLNPL RFNESRDHKL YTVLVENLPE
201: DHSKKNIQQI FHEAGNIKRI TIHDPHSTSE SAKQHNKQEM LISNKLHALV EYETMEAAEK AVAMLNNEQD WRNGMRVKLL KGMGKYGHKK QAWKGHHSEK
301: NSSRPEQTGD EENHGSNDHH EDTHEEEDGD HLSKDKGGQR YRNQGRSRKH KYRAGNGMGH GSAPSTHAAE ASKSPPGPRM PDGTRGFAVG RGRPPVPASN

Best Arabidopsis Sequence Match ( AT5G46250.1 )
(BLAST)

001: MSSLPLRSGE KMESPSISDA VPLHAPEDAT ADFSQPQSPL HEVDSFPVTE SSDDVVVNVS EIPNLSPSDD DFDHERNSGE DRDQDHGENP VETDGVVVPI
101: DELNQKIIRQ VEYYFSDENL PTDKFLLNAM KRNKKGFVPI STIATFHKMK KLTRDHALIV SALKESSFLV VSADEKKVKR LSPLPEIRDP KIFTVLVENL
201: PEDHSNENIR EIFGKAGSIK SVSICDPNAV EESEKGGKKE NFIRTRLHAF VEYETVEAAE KAAATLNNEQ DWRNGLRVKL LEQAAGKFAQ RRPARREVDK
301: EKDTTGRVHD QTGGEKNKKT REHQNHRLHH SDNPADDDGG NHQKDKNGNK GRVVGQGRRQ NHQGGNGIGH GTASSSSHPN YHPVEVSKRP PGPRMPDGTR
401: GFTMGRGKAI PPPTSTQTSH EV

Arabidopsis Description

LARP6ALa-related protein 6A [Source:UniProtKB/Swiss-Prot;Acc:Q94A38]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.