Factsheet for Solyc02g070550.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytoskeleton, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g113720.2.1
Solyc04g008430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46250.1	Solyc04g008430.1.1	AT2G01950.1	19000166
AT5G46250.1	Solyc03g113720.2.1	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054517	Potato	nucleus	80.21	76.14
VIT_10s0003g03190.t01	Wine grape	nucleus	48.93	53.51
Zm00001d019729_P001	Maize	nucleus	12.83	53.33
KRH21060	Soybean	nucleus	48.66	45.5
KRH11196	Soybean	nucleus	47.86	44.2
Bra017566.1-P	Field mustard	nucleus	41.98	40.57
AT5G46250.1	Thale cress	nucleus	45.45	40.28
CDY03229	Canola	nucleus	40.91	39.33
CDY35155	Canola	nucleus	40.91	39.13
CDY33465	Canola	nucleus	40.91	39.13
Bra025027.1-P	Field mustard	nucleus	40.91	39.13
CDY68074	Canola	nucleus	40.37	38.72
KXG33403	Sorghum	nucleus	39.04	32.37
TraesCS3D01G293700.1	Wheat	nucleus	40.91	31.74
GSMUA_Achr1P13840_001	Banana	nucleus, plastid	38.24	31.29
Zm00001d043418_P136	Maize	nucleus	37.97	30.87
TraesCS3A01G293900.1	Wheat	nucleus	40.37	30.82
TraesCS3B01G328600.1	Wheat	nucleus	40.37	30.82
HORVU3Hr1G072800.1	Barley	nucleus	40.91	30.24
Solyc08g015650.2.1	Tomato	nucleus	35.03	28.73
Solyc01g108310.2.1	Tomato	nucleus	30.48	28.36
Solyc10g050550.1.1	Tomato	nucleus	30.75	27.91
Solyc12g019000.1.1	Tomato	nucleus	34.49	27.27
Solyc12g096640.1.1	Tomato	nucleus, plastid	31.02	22.61

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030529	GO:GO:1990904
InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	UniProt:K4B836	InterPro:La_HTH
InterPro:Lupus_La	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF05383	PRINTS:PR00302	PFscan:PS50102	PFscan:PS50961
PANTHER:PTHR22792	PANTHER:PTHR22792:SF52	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM00715
SUPFAM:SSF46785	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc02g070550.2	EnsemblPlants:Solyc02g070550.2.1	UniParc:UPI0002768856	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

La-related protein 6A [Source:Projected from Arabidopsis thaliana (AT5G46250) UniProtKB/Swiss-Prot;Acc:Q94A38]

Coordinates

chr2:+:40292287..40297647

Molecular Weight (calculated)

41573.7 Da

IEP (calculated)

8.675

GRAVY (calculated)

-0.894

Length

374 amino acids

Sequence
(BLAST)

001: MEADGGGVLP IPSQTASFPP HDDDDHPDFS PVGSPESHFI NDHSEPSDQL HAQVTATVLT DDLRSKIVKQ VEYYFSDENL PTDKFLLKYV TRDKEGFVPV
101: KVIASFRKVK KLTKETSIIA AALRESSLLV VSRDGRKVKR LHPLPLSEIK DPKVCTVLVE NLPEDHSVNN LRSIFGQAGN VKHITIRDPH TERDPRKCTT
201: AEKLLSGKLH ALVEYNTVEA AEKAVTILND EQDWRFGLRV KLLKKINKPG QSKKGWRDPD SDRNNNIQAS DPAVNEEHNS SEHRVDSQDE EEGDHLSKET
301: IGEHAQKEKN GPRVPTRNRG RGRRNKRGTN GHGHGTTSST HLVEPSKPPP GPRMPDGTRG FAMGRGRPLS SSPS

Best Arabidopsis Sequence Match ( AT5G46250.1 )
(BLAST)

001: MSSLPLRSGE KMESPSISDA VPLHAPEDAT ADFSQPQSPL HEVDSFPVTE SSDDVVVNVS EIPNLSPSDD DFDHERNSGE DRDQDHGENP VETDGVVVPI
101: DELNQKIIRQ VEYYFSDENL PTDKFLLNAM KRNKKGFVPI STIATFHKMK KLTRDHALIV SALKESSFLV VSADEKKVKR LSPLPEIRDP KIFTVLVENL
201: PEDHSNENIR EIFGKAGSIK SVSICDPNAV EESEKGGKKE NFIRTRLHAF VEYETVEAAE KAAATLNNEQ DWRNGLRVKL LEQAAGKFAQ RRPARREVDK
301: EKDTTGRVHD QTGGEKNKKT REHQNHRLHH SDNPADDDGG NHQKDKNGNK GRVVGQGRRQ NHQGGNGIGH GTASSSSHPN YHPVEVSKRP PGPRMPDGTR
401: GFTMGRGKAI PPPTSTQTSH EV

Arabidopsis Description

LARP6ALa-related protein 6A [Source:UniProtKB/Swiss-Prot;Acc:Q94A38]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.