Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400066353 | Potato | nucleus | 65.17 | 92.58 |
| Solyc10g050550.1.1 | Tomato | nucleus | 59.7 | 58.25 |
| VIT_03s0063g01050.t01 | Wine grape | nucleus | 51.49 | 50.24 |
| KRH50235 | Soybean | nucleus | 48.76 | 49.12 |
| KRH71184 | Soybean | nucleus | 48.76 | 48.51 |
| CDX82312 | Canola | nucleus | 46.02 | 42.92 |
| CDX99268 | Canola | nucleus | 47.26 | 42.79 |
| Bra001733.1-P | Field mustard | nucleus | 48.51 | 42.58 |
| CDX92302 | Canola | nucleus | 46.77 | 42.44 |
| Bra022387.1-P | Field mustard | nucleus | 46.77 | 42.44 |
| CDY22991 | Canola | nucleus | 44.53 | 41.53 |
| AT3G19090.2 | Thale cress | nucleus | 48.01 | 40.04 |
| TraesCS2B01G285700.1 | Wheat | nucleus | 43.53 | 39.24 |
| TraesCS2D01G265900.1 | Wheat | nucleus | 43.53 | 39.15 |
| TraesCS2A01G256900.1 | Wheat | nucleus | 43.53 | 38.8 |
| Os03t0566500-01 | Rice | nucleus, plastid | 41.29 | 38.69 |
| Os07t0102500-01 | Rice | nucleus | 42.04 | 38.58 |
| GSMUA_Achr4P23770_001 | Banana | nucleus | 42.29 | 36.17 |
| KXG38156 | Sorghum | nucleus | 41.79 | 35.74 |
| Zm00001d032397_P001 | Maize | nucleus | 36.32 | 35.35 |
| Zm00001d018613_P004 | Maize | nucleus | 43.78 | 34.85 |
| EER97821 | Sorghum | nucleus | 43.03 | 33.27 |
| Solyc08g015650.2.1 | Tomato | nucleus | 35.32 | 31.14 |
| Solyc12g019000.1.1 | Tomato | nucleus | 36.32 | 30.87 |
| Solyc02g070550.2.1 | Tomato | nucleus | 28.36 | 30.48 |
| Solyc12g096640.1.1 | Tomato | nucleus, plastid | 34.33 | 26.9 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:3.30.70.330 | MapMan:35.1 | InterPro:Ataxin-2_C | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR006630 | InterPro:IPR012677 | InterPro:IPR036388 |
| UniProt:K4B347 | InterPro:La_HTH | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF05383 | PFAM:PF07145 |
| PFscan:PS50102 | PFscan:PS50961 | PANTHER:PTHR22792 | PANTHER:PTHR22792:SF62 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SMART:SM00715 | SUPFAM:SSF46785 | SUPFAM:SSF54928 | EnsemblPlantsGene:Solyc01g108310.2 | EnsemblPlants:Solyc01g108310.2.1 |
| UniParc:UPI0002768247 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1:+:95669024..95671264
Molecular Weight (calculated)
44716.1 Da
IEP (calculated)
9.800
GRAVY (calculated)
-0.598
Length
402 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQLQPERSV VEESSTTPHL HKENSASFKF NVQAPEFVPR SHTTTTNTTT TTTPISSYFY PYFQYLSGGN TTSDWLYVAD QDTLSYLPNQ NFSALLQKDV
101: LPEDVKNKII KQVEYQLSDM SLLANENLLR QMNKDLEGFV PISSVSATKK IKSLITNQQT LAHALLSSTK LIVSNDGKKV KRRIPFTDKD KEELQLRTVV
201: AENLPDDHSH HNIEKIFKVA GSVKTIRVCH PQDPNLSRAR GDIGISNKLH ALIEFENPEA AERAVEKLND ERNWRKGLRV RLLLRRSPKS ILKIRKCEFE
301: GCFDDEDGVP SEDSDNNNVE DGVGSAKKAW NKGRGKLRMR PQIHGGRGLL AALPQSSSSS GVGEGAVRQV TKGPRMPDGT RGFTMGRGKP LTATIISGVH
401: VA
101: LPEDVKNKII KQVEYQLSDM SLLANENLLR QMNKDLEGFV PISSVSATKK IKSLITNQQT LAHALLSSTK LIVSNDGKKV KRRIPFTDKD KEELQLRTVV
201: AENLPDDHSH HNIEKIFKVA GSVKTIRVCH PQDPNLSRAR GDIGISNKLH ALIEFENPEA AERAVEKLND ERNWRKGLRV RLLLRRSPKS ILKIRKCEFE
301: GCFDDEDGVP SEDSDNNNVE DGVGSAKKAW NKGRGKLRMR PQIHGGRGLL AALPQSSSSS GVGEGAVRQV TKGPRMPDGT RGFTMGRGKP LTATIISGVH
401: VA
001: MAQMQREEVE SVTTEKKRLD GGGGSSGAQA TAFKFNAQAP EFVPRSHTTA PAPQVSPVSG YFYPCFHYNG GCIGGCGGGV CGGGGTGVGT QSSDWIYVGG
101: GDPTAQHQHV HDPAAAFYIS NPAVQFPASQ NSSSSSKNLL SDDLRLKIVK QVEYQFTDMS LLANESISKH ISKDPEGYVP VSYIASTKKI KALTSNHHLV
201: SLALRSSSKL VVSEDGKKVK RTSQFTDRDR EELQGRTVVA ENLPDDHSYQ NLEKIFGVVG NVKAIRICHP PESNSSRPKG DFLMSNKIHA LIEYDNTVIA
301: DKAVEKLNDE RNWRKGLRVR LLLRCSPKSV LKNRRNFDGI LIDDELPSYE SGEDSPRLHL TESQLDNDGD DNNVGGLWGK GRGKGRGRSP RSYAVGGGGR
401: SFGIGLGVSL GIPSLGSHES SSPKTATKGP RMPDGTRGFT MGRGKPSISL SPNNL
101: GDPTAQHQHV HDPAAAFYIS NPAVQFPASQ NSSSSSKNLL SDDLRLKIVK QVEYQFTDMS LLANESISKH ISKDPEGYVP VSYIASTKKI KALTSNHHLV
201: SLALRSSSKL VVSEDGKKVK RTSQFTDRDR EELQGRTVVA ENLPDDHSYQ NLEKIFGVVG NVKAIRICHP PESNSSRPKG DFLMSNKIHA LIEYDNTVIA
301: DKAVEKLNDE RNWRKGLRVR LLLRCSPKSV LKNRRNFDGI LIDDELPSYE SGEDSPRLHL TESQLDNDGD DNNVGGLWGK GRGKGRGRSP RSYAVGGGGR
401: SFGIGLGVSL GIPSLGSHES SSPKTATKGP RMPDGTRGFT MGRGKPSISL SPNNL
Arabidopsis Description
RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLZ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.