Factsheet for PGSC0003DMT400066353

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g108310.2.1	Tomato	nucleus	92.58	65.17
PGSC0003DMT400083493	Potato	nucleus	71.02	48.91
KRH71184	Soybean	nucleus	55.12	38.61
KRH50235	Soybean	nucleus	53.71	38.1
VIT_03s0063g01050.t01	Wine grape	nucleus	55.12	37.86
CDX82312	Canola	nucleus	52.65	34.57
CDX99268	Canola	nucleus	54.06	34.46
CDY22991	Canola	nucleus	51.24	33.64
Bra001733.1-P	Field mustard	nucleus	52.65	32.53
Bra022387.1-P	Field mustard	nucleus	50.88	32.51
CDX92302	Canola	nucleus	50.88	32.51
Os03t0566500-01	Rice	nucleus, plastid	48.06	31.7
Os07t0102500-01	Rice	nucleus	48.76	31.51
TraesCS2B01G285700.1	Wheat	nucleus	49.47	31.39
TraesCS2D01G265900.1	Wheat	nucleus	49.47	31.32
TraesCS2A01G256900.1	Wheat	nucleus	49.47	31.04
AT3G19090.2	Thale cress	nucleus	51.59	30.29
GSMUA_Achr4P23770_001	Banana	nucleus	48.76	29.36
Zm00001d032397_P001	Maize	nucleus	40.28	27.6
KXG38156	Sorghum	nucleus	45.23	27.23
Zm00001d018613_P004	Maize	nucleus	48.41	27.13
EER97821	Sorghum	nucleus	48.41	26.35
PGSC0003DMT400064931	Potato	nucleus	41.7	25.38
PGSC0003DMT400054517	Potato	nucleus	33.92	24.37
PGSC0003DMT400075259	Potato	nucleus	41.34	22.59

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	InterPro:La_HTH
UniProt:M1CFF4	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG400025802	PGSC:PGSC0003DMG400025802	EnsemblPlants:PGSC0003DMT400066353
PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF62	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928	UniParc:UPI0002969854	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

Lupus la ribonucleoprotein [Source:PGSC_GENE;Acc:PGSC0003DMG400025802]

Coordinates

chr1:+:84739099..84740720

Molecular Weight (calculated)

31146.5 Da

IEP (calculated)

10.605

GRAVY (calculated)

-0.581

Length

283 amino acids

Sequence
(BLAST)

001: MSLLANESLL RQMNKDLEGF VPISSVSATK KIKSLITNQQ TLAHALLSST KLIVSNDGKK VKRRIPFTDK DKEDLQLRTV VAENLPDDHS HHNIEKIFKV
101: AGSVKTIRVC HPQDPNLSRA RGDIGISNKL HALIEFENPE AAERAVEKLN DERNWRKGLR VRLLLRRSPK SILKIRKCEF EGCFDDEDGL PSEDSDSNNV
201: EDGVGSAKKA WNKGRGKLRM RPQIHGGRGL LAALPQSSSS SGLGEGPVRQ VTKGPRMPDG TRGFTMGRGK PLTATVISGV HVA

Best Arabidopsis Sequence Match ( AT3G19090.1 )
(BLAST)

001: MAQMQREEVE SVTTEKKRLD GGGGSSGAQA TAFKFNAQAP EFVPRSHTTA PAPQVSPVSG YFYPCFHYNG GCIGGCGGGV CGGGGTGVGT QSSDWIYVGG
101: GDPTAQHQHV HDPAAAFYIS NPAVQFPASQ NSSSSSKNLL SDDLRLKIVK QVEYQFTDMS LLANESISKH ISKDPEGYVP VSYIASTKKI KALTSNHHLV
201: SLALRSSSKL VVSEDGKKVK RTSQFTDRDR EELQGRTVVA ENLPDDHSYQ NLEKIFGVVG NVKAIRICHP PESNSSRPKG DFLMSNKIHA LIEYDNTVIA
301: DKAVEKLNDE RNWRKGLRVR LLLRCSPKSV LKNRRNFDGI LIDDELPSYE SGEDSPRLHL TESQLDNDGD DNNVGGLWGK GRGKGRGRSP RSYAVGGGGR
401: SFGIGLGVSL GIPSLGSHES SSPKTATKGP RMPDGTRGFT MGRGKPSISL SPNNL

Arabidopsis Description

RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLZ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.