Factsheet for PGSC0003DMT400054517

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytoskeleton, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063187
PGSC0003DMT400075691

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46250.1	PGSC0003DMT400075691	AT2G01950.1	19000166
AT5G46250.1	PGSC0003DMT400063187	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g070550.2.1	Tomato	nucleus	76.14	80.21
VIT_10s0003g03190.t01	Wine grape	nucleus	45.94	52.92
Zm00001d019729_P001	Maize	nucleus	11.68	51.11
KRH11196	Soybean	nucleus	45.94	44.69
KRH21060	Soybean	nucleus	45.18	44.5
Bra017566.1-P	Field mustard	nucleus	39.09	39.79
AT5G46250.1	Thale cress	nucleus	41.88	39.1
CDY68074	Canola	nucleus	38.58	38.97
Bra025027.1-P	Field mustard	nucleus	38.58	38.87
CDY33465	Canola	nucleus	38.58	38.87
CDY35155	Canola	nucleus	38.32	38.62
CDY03229	Canola	nucleus	37.82	38.3
PGSC0003DMT400066353	Potato	nucleus	24.37	33.92
TraesCS3D01G293700.1	Wheat	nucleus	39.09	31.95
KXG33403	Sorghum	nucleus	36.29	31.71
TraesCS3A01G293900.1	Wheat	nucleus	39.09	31.43
TraesCS3B01G328600.1	Wheat	nucleus	39.09	31.43
GSMUA_Achr1P13840_001	Banana	nucleus, plastid	35.79	30.85
Zm00001d043418_P136	Maize	nucleus	35.28	30.22
HORVU3Hr1G072800.1	Barley	nucleus	38.32	29.84
PGSC0003DMT400083493	Potato	nucleus	27.41	26.28
PGSC0003DMT400064931	Potato	nucleus	30.96	26.24
PGSC0003DMT400075259	Potato	nucleus	29.19	22.2

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:102582212	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030529
GO:GO:1990904	InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	InterPro:La_HTH
InterPro:Lupus_La	UniProt:M1BWH2	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF05383	EnsemblPlantsGene:PGSC0003DMG400021160	PGSC:PGSC0003DMG400021160
EnsemblPlants:PGSC0003DMT400054517	PRINTS:PR00302	PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF52
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928
UniParc:UPI000295CE01	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

Lupus la ribonucleoprotein [Source:PGSC_GENE;Acc:PGSC0003DMG400021160]

Coordinates

chr2:+:29747012..29754141

Molecular Weight (calculated)

43912.0 Da

IEP (calculated)

9.000

GRAVY (calculated)

-0.784

Length

394 amino acids

Sequence
(BLAST)

001: MEADGGGVLP IPSQTASFPP HDDDRPDFSP VGSPESHFID DLSQPSDQLH AQVTATVLTD DLRNKIVKQV EYYFSDENLP TDKFLLKYVT RDKEGFVPMK
101: VIASFRKVKK LTKETSIIAA ALRESSLLVV SRDGRKVKRL HPLPLSDIKD PKVCTVLVEN LPEDHSVNNL RSIFGQAGNV KHITIRDPHT ERDPRKCTTA
201: EKLLSGKLHA LVEYNTVEAA ERAVTILNDE QDWRFGLRVK LLKKINKPGQ SKKGWRDPDS DRNNNIQASD LTVNEENNSS EHRVDSQDEE RVGFKMQPCG
301: ANFRICCCIE MEGDHLLKET IGEHAQKEKN GTRVPTRSRG RGRRNKRGTN GHGHGATSST HLVEPSKPPP GPRMPDGTRG FAMGRGRPLS SSPS

Best Arabidopsis Sequence Match ( AT5G46250.1 )
(BLAST)

001: MSSLPLRSGE KMESPSISDA VPLHAPEDAT ADFSQPQSPL HEVDSFPVTE SSDDVVVNVS EIPNLSPSDD DFDHERNSGE DRDQDHGENP VETDGVVVPI
101: DELNQKIIRQ VEYYFSDENL PTDKFLLNAM KRNKKGFVPI STIATFHKMK KLTRDHALIV SALKESSFLV VSADEKKVKR LSPLPEIRDP KIFTVLVENL
201: PEDHSNENIR EIFGKAGSIK SVSICDPNAV EESEKGGKKE NFIRTRLHAF VEYETVEAAE KAAATLNNEQ DWRNGLRVKL LEQAAGKFAQ RRPARREVDK
301: EKDTTGRVHD QTGGEKNKKT REHQNHRLHH SDNPADDDGG NHQKDKNGNK GRVVGQGRRQ NHQGGNGIGH GTASSSSHPN YHPVEVSKRP PGPRMPDGTR
401: GFTMGRGKAI PPPTSTQTSH EV

Arabidopsis Description

LARP6ALa-related protein 6A [Source:UniProtKB/Swiss-Prot;Acc:Q94A38]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.