Factsheet for Zm00001d043418_P136

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46250.1	Zm00001d000055_P001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019729_P001	Maize	nucleus	18.26	93.33
KXG33403	Sorghum	nucleus	55.43	56.54
TraesCS3D01G293700.1	Wheat	nucleus	42.83	40.87
TraesCS3B01G328600.1	Wheat	nucleus	42.39	39.8
VIT_10s0003g03190.t01	Wine grape	nucleus	29.35	39.47
TraesCS3A01G293900.1	Wheat	nucleus	41.74	39.18
Solyc02g070550.2.1	Tomato	nucleus	30.87	37.97
HORVU3Hr1G072800.1	Barley	nucleus	40.0	36.36
KRH11196	Soybean	nucleus	31.96	36.3
KRH21060	Soybean	nucleus	31.3	36.0
PGSC0003DMT400054517	Potato	nucleus	30.22	35.28
GSMUA_Achr1P13840_001	Banana	nucleus, plastid	33.91	34.14
CDY35155	Canola	nucleus	28.7	33.76
Bra017566.1-P	Field mustard	nucleus	28.26	33.59
CDY03229	Canola	nucleus	28.04	33.16
Bra025027.1-P	Field mustard	nucleus	27.61	32.48
CDY68074	Canola	nucleus	27.39	32.31
CDY33465	Canola	nucleus	27.17	31.97
AT5G46250.1	Thale cress	nucleus	26.96	29.38
Zm00001d032397_P001	Maize	nucleus	22.83	25.42
Zm00001d031707_P001	Maize	nucleus	23.26	24.88
Zm00001d007279_P001	Maize	nucleus	24.35	23.83
Zm00001d018613_P004	Maize	nucleus	25.87	23.56
Zm00001d023987_P001	Maize	nucleus	20.0	18.78
Zm00001d020113_P001	Maize	cytosol	12.83	14.82

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100193734	EntrezGene:100216671	Gene3D:3.30.70.330	MapMan:35.1	UniProt:A0A1D6NBL0
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030529	GO:GO:1990904	InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677
InterPro:IPR036388	InterPro:La_HTH	InterPro:La_like_plant_RRM	InterPro:Lupus_La	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONM37849.1
PFAM:PF05383	PRINTS:PR00302	PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF52
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928	UniParc:UPI000842EAC4
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d043418	EnsemblPlants:Zm00001d043418_P136	EnsemblPlants:Zm00001d043418_T136	SEG:seg

Description

La-related protein 6A

Coordinates

chr3:+:199099556..199105329

Molecular Weight (calculated)

50327.0 Da

IEP (calculated)

5.440

GRAVY (calculated)

-0.512

Length

460 amino acids

Sequence
(BLAST)

001: MLGRPALPGG YIGASAPLIS LTGMDGQAPP LLDAVVLEPL AVGDELHPRR PVEVEDAPAA APPSGMDGQV PPLYNVTRDP LTVSDELQPT GEVVDDALLV
101: APDIVKGEVM EDDILPVATD IINDAASECP EAGSDGVVLT DELRNRIVKQ VEYYFSDENL PTDEFLLNYV KKNNKGFVPI EIIASFRRMK KLVQDLSVIE
201: AALRTSSKLV VSSNGKRVRR LHPLPHKELK DSKKSTVLVE NLPPDFSMES IQEKFATVGK VVNITINDPE SVKEFSTAKK PDFNLSFKAH VLVEYEAVEA
301: AEKAVTALSD ESNWRTGMKV RLLSKQSVMG PGKYKKPSKE NQDAVSKMID QNQHSKEDQL KTLEKISGAD AVGITKDRDN LKPVFITETE HQDQKPNARG
401: RKGWYKGQGQ MQQNANKQGS CGSESLNKPI SGPRMPDGTR GFTLGRGRSL PLQKSEKAEE

Best Arabidopsis Sequence Match ( AT5G46250.1 )
(BLAST)

001: MSSLPLRSGE KMESPSISDA VPLHAPEDAT ADFSQPQSPL HEVDSFPVTE SSDDVVVNVS EIPNLSPSDD DFDHERNSGE DRDQDHGENP VETDGVVVPI
101: DELNQKIIRQ VEYYFSDENL PTDKFLLNAM KRNKKGFVPI STIATFHKMK KLTRDHALIV SALKESSFLV VSADEKKVKR LSPLPEIRDP KIFTVLVENL
201: PEDHSNENIR EIFGKAGSIK SVSICDPNAV EESEKGGKKE NFIRTRLHAF VEYETVEAAE KAAATLNNEQ DWRNGLRVKL LEQAAGKFAQ RRPARREVDK
301: EKDTTGRVHD QTGGEKNKKT REHQNHRLHH SDNPADDDGG NHQKDKNGNK GRVVGQGRRQ NHQGGNGIGH GTASSSSHPN YHPVEVSKRP PGPRMPDGTR
401: GFTMGRGKAI PPPTSTQTSH EV

Arabidopsis Description

LARP6ALa-related protein 6A [Source:UniProtKB/Swiss-Prot;Acc:Q94A38]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.