Factsheet for Zm00001d023987_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003106_P003
Zm00001d005276_P007
Zm00001d019824_P004
Zm00001d025801_P005

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43970.1	Zm00001d003106_P003	AT1G49760.1	21798944
AT2G43970.1	Zm00001d005276_P007	AT1G49760.1	21798944
AT2G43970.1	Zm00001d019824_P004	AT1G49760.1	21798944
AT2G43970.1	Zm00001d025801_P005	AT1G49760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16897	Sorghum	nucleus	62.24	62.37
TraesCS5D01G126900.3	Wheat	nucleus	48.37	50.97
TraesCS5B01G121000.2	Wheat	nucleus	48.16	50.86
HORVU5Hr1G029110.1	Barley	nucleus	46.53	49.35
TraesCS5A01G115200.1	Wheat	nucleus	46.73	49.25
VIT_09s0002g07980.t01	Wine grape	cytosol	6.33	45.59
Os12t0225100-01	Rice	nucleus	21.22	42.8
Zm00001d007279_P001	Maize	nucleus	40.61	42.34
GSMUA_Achr3P19230_001	Banana	nucleus	36.73	39.56
GSMUA_Achr6P18240_001	Banana	nucleus	36.73	39.22
VIT_05s0094g01400.t01	Wine grape	mitochondrion	25.71	38.77
Zm00001d019729_P001	Maize	nucleus	6.94	37.78
KRH69036	Soybean	nucleus	32.04	32.98
Bra004795.1-P	Field mustard	nucleus	33.06	32.73
KRG97304	Soybean	nucleus	31.22	32.69
Zm00001d031707_P001	Maize	nucleus	28.16	32.09
GSMUA_Achr2P11420_001	Banana	mitochondrion	32.04	31.85
CDY17896	Canola	nucleus	29.18	31.57
CDX79791	Canola	nucleus	31.84	31.2
Solyc08g015650.2.1	Tomato	nucleus	28.57	30.7
PGSC0003DMT400064931	Potato	nucleus	28.37	29.89
Solyc12g019000.1.1	Tomato	nucleus	28.57	29.6
AT2G43970.1	Thale cress	nucleus	32.04	28.81
Solyc12g096640.1.1	Tomato	nucleus, plastid	26.73	25.54
PGSC0003DMT400075259	Potato	nucleus	26.73	25.29
Zm00001d032397_P001	Maize	nucleus	21.22	25.18
Zm00001d018613_P004	Maize	nucleus	25.1	24.36
Zm00001d020113_P001	Maize	cytosol	16.73	20.6
Zm00001d043418_P136	Maize	nucleus	18.78	20.0

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.1	UniProt:A0A1D6IX46	ProteinID:AQK40498.1	InterPro:Ataxin-2_C	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR006630	InterPro:IPR036388	InterPro:La_HTH
PFAM:PF07145	PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF81	SMART:SM00715	SUPFAM:SSF46785
UniParc:UPI000842CF1B	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d023987	EnsemblPlants:Zm00001d023987_P001	EnsemblPlants:Zm00001d023987_T001
SEG:seg	:	:	:	:	:

Description

La-related protein 6B

Coordinates

chr10:-:34453878..34465900

Molecular Weight (calculated)

53912.3 Da

IEP (calculated)

10.031

GRAVY (calculated)

-0.677

Length

490 amino acids

Sequence
(BLAST)

001: MPQMEGSTDQ IAAGWFAKEP ASERPVGLPR TGSSSRLNAQ APEFVPRGPP PPAPAVVLPP PPQVIRMFAA PPPPPRGGFF SAPQPRPFEY YAPIGERSGF
101: AAKEQQAPEL EAEMLPPAAV KTEPVVDGLD DEVVHKITKQ VMERYKEQKD LYMVFIDLEK AYDKILRNLM WWALDKYKVP TKYVKLIKDI FNNTGSMTNF
201: PSLQITVPIS VIAGFKKVKT SVRNNVMLAA ALRTSSKLVV SDDGKRVKRQ QPFTESDLQE LQSRIVVAEN LPGDPSYQNL KKIFSAVGSL ISIRTCYPQT
301: PNGTGPATNR SSKLDMLFAN KVKGAGKGKN GMNETDGNSE EDVSTLNHSN EKQFEQSSQL LDVLPEHLFD ENFNKEVPKR GKGRGRGGRG HGRGNHQYNN
401: HHHNNQHHQN NQPQYNNHGN NHLGGNRGSL HSVGTTPHNL ITKLEPHPQL PIGANKLPPG PRMPDGTRGF TMGRGKPQAV LPGLCAVGVE

Best Arabidopsis Sequence Match ( AT2G43970.1 )
(BLAST)

001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE

Arabidopsis Description

LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.