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Wine grape
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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, cytosol

Predictor Summary:
  • nucleus 2
  • plastid 3
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
VIT_09s0002g07980.t01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G34110.1 VIT_09s0002g07980.t01 AT2G43970.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH70673 Soybean nucleus 67.73 82.25
KRH50336 Soybean cytosol 67.73 81.87
VIT_18s0001g10170.t01 Wine grape cytosol 66.33 81.56
VIT_07s0031g00210.t01 Wine grape cytosol 66.2 79.66
PGSC0003DMT400066245 Potato extracellular 64.93 79.47
Solyc01g107870.2.1 Tomato extracellular 64.68 79.16
GSMUA_Achr4P09890_001 Banana cytosol 61.63 74.39
GSMUA_Achr9P00990_001 Banana cytosol 61.5 74.35
CDY67364 Canola nucleus 27.19 73.04
CDX89664 Canola cytosol 56.54 72.48
GSMUA_AchrUn_... Banana cytosol 59.97 72.39
CDY62723 Canola cytosol 56.42 71.96
Bra034603.1-P Field mustard cytosol, plastid 56.42 71.73
CDY51957 Canola cytosol, plastid 56.29 71.57
Bra013104.1-P Field mustard cytosol 55.91 71.43
AT4G34110.1 Thale cress cytosol 57.05 71.38
CDX71223 Canola cytosol 57.69 71.16
CDY51045 Canola cytosol 58.96 71.06
CDY54068 Canola cytosol 58.96 71.06
Bra018797.1-P Field mustard cytosol 58.96 71.06
CDX75397 Canola nucleus, plastid 55.4 70.78
Bra011488.1-P Field mustard cytosol, plastid 55.02 70.64
CDX69025 Canola nucleus, plastid 54.76 70.54
Os09t0115400-01 Rice nucleus 58.96 70.09
VIT_18s0001g10210.t01 Wine grape cytosol 5.59 69.84
Os08t0314800-02 Rice cytosol, nucleus, plasma membrane 58.45 69.7
Zm00001d003106_P003 Maize extracellular, mitochondrion, plasma membrane 57.69 69.63
GSMUA_Achr4P20270_001 Banana cytosol 56.8 69.52
Zm00001d025801_P005 Maize cytosol, plastid 57.56 69.48
HORVU2Hr1G087390.3 Barley cytosol, mitochondrion, nucleus 53.88 69.39
Os04t0504800-01 Rice plasma membrane 57.94 69.2
AT1G49760.1 Thale cress cytosol 58.83 69.0
VIT_18s0001g10220.t01 Wine grape cytosol 8.77 69.0
TraesCS5B01G159400.1 Wheat cytosol 56.8 68.66
TraesCS5A01G161800.2 Wheat nucleus 56.8 68.66
TraesCS5D01G167000.1 Wheat nucleus, unclear 56.67 68.51
EES12460 Sorghum plastid 57.56 68.22
CDY36634 Canola nucleus 56.16 68.1
Bra015220.1-P Field mustard cytosol 49.94 67.99
KXG35258 Sorghum cytosol 56.42 67.68
TraesCS7D01G287900.1 Wheat cytosol 54.76 67.55
Zm00001d005276_P007 Maize cytosol 55.78 67.13
CDY67365 Canola plastid 24.78 66.78
TraesCS2A01G359000.1 Wheat cytosol 56.42 66.77
TraesCS2D01G358000.1 Wheat cytosol 56.29 66.72
CDX79296 Canola plastid 15.5 66.67
TraesCS2B01G378400.1 Wheat nucleus 56.29 66.62
Zm00001d019824_P004 Maize cytosol 55.27 66.31
TraesCS7A01G288700.1 Wheat nucleus 55.65 66.16
HORVU5Hr1G050560.1 Barley plastid 56.8 63.68
HORVU7Hr1G063970.1 Barley cytosol, nucleus, plastid 55.53 61.03
TraesCS7B01G182800.3 Wheat cytosol 51.59 60.15
VIT_18s0001g10190.t01 Wine grape cytosol, mitochondrion 9.53 60.0
GSMUA_Achr8P24250_001 Banana cytosol, plastid 48.03 58.33
VIT_18s0001g02490.t01 Wine grape plastid 48.16 57.51
GSMUA_Achr7P05430_001 Banana nucleus 58.7 51.11
Bra022413.1-P Field mustard cytosol 26.68 47.09
CDX92325 Canola nucleus 18.17 44.41
VIT_09s0002g03160.t01 Wine grape cytosol, nucleus, plastid, vacuole 26.56 43.91
VIT_08s0007g04380.t01 Wine grape cytosol 34.31 42.59
VIT_04s0023g01470.t01 Wine grape nucleus 14.87 31.37
VIT_09s0002g00880.t01 Wine grape mitochondrion, nucleus 12.83 24.05
VIT_11s0016g00700.t01 Wine grape mitochondrion, nucleus 12.83 23.93
VIT_06s0004g02040.t01 Wine grape nucleus 13.47 23.82
VIT_04s0008g02930.t01 Wine grape nucleus 11.82 23.43
VIT_18s0001g11080.t01 Wine grape nucleus 12.07 22.73
VIT_03s0063g00850.t01 Wine grape nucleus 11.94 22.71
VIT_19s0090g00280.t01 Wine grape nucleus 13.09 22.25
VIT_04s0043g01000.t01 Wine grape cytosol, extracellular, mitochondrion 3.3 17.81
Protein Annotations
Gene3D:1.10.1900.10EntrezGene:100241923wikigene:100241923MapMan:17.4.2.5Gene3D:3.30.70.330EMBL:AM468150
ProteinID:CAN65906ProteinID:CAN65906.1ProteinID:CCB56845ProteinID:CCB56845.1UniProt:F6HQ88EMBL:FN596006
GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0016020GO:GO:0016021InterPro:IPR000504InterPro:IPR002004
InterPro:IPR012677EntrezGene:LOC100241923wikigene:LOC100241923InterPro:Nucleotide-bd_a/b_plait_sfInterPro:PABP-domInterPro:PABP_1234
InterPro:PABP_HYDPFAM:PF00076PFAM:PF00658PFscan:PS50102PFscan:PS51309PANTHER:PTHR24012
PANTHER:PTHR24012:SF349InterPro:RBD_domain_sfInterPro:RRM_domInterPro:RRM_dom_eukSMART:SM00360SMART:SM00361
SMART:SM00517SUPFAM:SSF54928SUPFAM:SSF63570TIGR:TC52763TIGR:TC63914TIGRFAMs:TIGR01628
TMHMM:TMhelixUniParc:UPI00021082B6ArrayExpress:VIT_03s0063g00070EnsemblPlantsGene:VIT_03s0063g00070EnsemblPlants:VIT_03s0063g00070.t01RefSeq:XP_002285190
RefSeq:XP_002285190.1SEG:seg::::
Description
Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:F6HQ88]
Coordinates
chr3:+:3610186..3626197
Molecular Weight (calculated)
86402.4 Da
IEP (calculated)
6.230
GRAVY (calculated)
-0.364
Length
787 amino acids
Sequence
(BLAST)
001: MAAQVQVQPQ GPGPAPNGAA GAGGNQFVTT SLYVGDLELN VNDSQLYDLF SQMGAVVSVR VCRDLSTRRS LGYGYVNYSN PQDEKEKETI YEGFCVFCLI
101: PSNYAIFFVL GFSYIHKKRR GKERGGELQK RELNFLRVGG EMAEVQDHEG LLSGTNDEPN IGPSRFASAS LYVGDLDLNV TDSQLHDLFS QLAQVVSIRV
201: CRDSTTHRSL GYGYVNYTDL EDAARALDVL NFTPLNGKPI RIMYSHRDPS IRKSGTGNIF IKNLDKGIDH KALHDTFSAF GNILSCKVAT DASGMSKGHG
301: FVQFDSEEAA QKAIDKLNGM LLNDKQVFVG PFVRKQERES TINKEKFNNV FVKNISEGMT EEDLTRIFGE FGPITSVVVM RDGDGKSKCF GFVNFENVDD
401: AAMSVEALNG QKFDDKEWYV GKAQKKSERE IELKSRFEQN MKEAVDKFQG ANLYIKNLDD SIGDDKLKEL FAQFGTITSC KVMRDPNGLS RGSGFVAFSS
501: PEEASRALAE MNSKMVVSKP LYVALAQRKE DRRARLQAQF SQMRPVPMPP SVVPRLPMYP PSGPGLGQQM FYGQAPPAII PPQPGFGYQQ QLVPGMRPAG
601: PPMPNFFVPI VQQGQQGQRP GGRRAGAVPM QQTQQQVPLM QQQMLPRGRV FRYPPGRGLS DVPMPGVAGG MVSVPYDMGG MPLHDAAISQ SIPVGALATA
701: LANAPPAEQR TMLGENLYPL VEQLEPEMAA KVTGMLLEMD QTEVLHLLES PDALKAKVAE AMEVLRNVAQ QQQATNAADQ LGSLSLE
Best Arabidopsis Sequence Match ( AT1G49760.1 )
(BLAST)
001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
Arabidopsis Description
PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.