Factsheet for VIT_18s0001g10220.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g10210.t01	Wine grape	cytosol	58.0	92.06
CDX79295	Canola	cytosol, plastid	67.0	67.0
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	72.0	57.6
VIT_18s0001g10170.t01	Wine grape	cytosol	94.0	14.69
VIT_07s0031g00210.t01	Wine grape	cytosol	80.0	12.23
VIT_18s0001g02490.t01	Wine grape	plastid	61.0	9.26
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	69.0	8.77
VIT_08s0007g04380.t01	Wine grape	cytosol	42.0	6.62
VIT_06s0004g02040.t01	Wine grape	nucleus	13.0	2.92
VIT_04s0023g01470.t01	Wine grape	nucleus	8.0	2.14
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	5.0	1.19
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	5.0	1.18
VIT_19s0090g00280.t01	Wine grape	nucleus	4.0	0.86
VIT_04s0008g02930.t01	Wine grape	nucleus	3.0	0.76
VIT_18s0001g11080.t01	Wine grape	nucleus	3.0	0.72
VIT_09s0002g03160.t01	Wine grape	cytosol, nucleus, plastid, vacuole	1.0	0.21
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	0.0	0.0
VIT_03s0063g00850.t01	Wine grape	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.1900.10	MapMan:35.1	ProteinID:CCB45823	ProteinID:CCB45823.1	UniProt:F6H1B4	EMBL:FN595227
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0016740
GO:GO:0016747	InterPro:IPR002004	InterPro:PABP-dom	InterPro:PABP_HYD	PFAM:PF00658	PFscan:PS51309
PANTHER:PTHR24012	PANTHER:PTHR24012:SF349	SMART:SM00517	SUPFAM:SSF63570	UniParc:UPI00015C7AC3	ArrayExpress:VIT_18s0001g10220
EnsemblPlantsGene:VIT_18s0001g10220	EnsemblPlants:VIT_18s0001g10220.t01	:	:	:	:

Description

No Description!

Coordinates

chr18:+:8562593..8563246

Molecular Weight (calculated)

10880.1 Da

IEP (calculated)

4.136

GRAVY (calculated)

-0.114

Length

100 amino acids

Sequence
(BLAST)

1: MPISTLASAL ANATPDQQRT MLSESLYPLV DQLEHEMAAK LTGMLLEMGQ TEFLHLLESP EALKSKVAEA MDVLRNVAQQ QANSPTEQLS SLSLNDSLVP

Best Arabidopsis Sequence Match ( AT1G49760.1 )
(BLAST)

001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P

Arabidopsis Description

PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.