Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g108500.2.1 | Tomato | nucleus | 69.57 | 69.73 |
| GSMUA_Achr3P06840_001 | Banana | nucleus | 52.42 | 69.55 |
| GSMUA_Achr9P15210_001 | Banana | nucleus | 52.42 | 69.55 |
| KRH71168 | Soybean | nucleus | 71.98 | 69.14 |
| KRH50251 | Soybean | nucleus | 71.5 | 68.68 |
| VIT_18s0001g11080.t01 | Wine grape | nucleus | 69.32 | 68.66 |
| PGSC0003DMT400066648 | Potato | nucleus | 69.57 | 68.57 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 50.72 | 67.09 |
| Solyc10g050860.1.1 | Tomato | nucleus | 69.08 | 66.82 |
| Bra018813.1-P | Field mustard | mitochondrion, nucleus | 61.84 | 65.64 |
| GSMUA_Achr10P... | Banana | nucleus | 49.52 | 65.29 |
| TraesCS5B01G241400.1 | Wheat | nucleus | 52.9 | 64.04 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 52.66 | 63.74 |
| TraesCS5A01G243500.1 | Wheat | nucleus | 52.66 | 63.74 |
| CDY16528 | Canola | nucleus | 65.22 | 63.68 |
| CDY32840 | Canola | nucleus | 64.73 | 63.66 |
| CDY29341 | Canola | nucleus | 64.01 | 63.25 |
| CDY50959 | Canola | nucleus | 65.46 | 63.02 |
| CDY28101 | Canola | nucleus | 64.98 | 62.7 |
| CDY68866 | Canola | nucleus | 62.8 | 62.65 |
| CDY22988 | Canola | nucleus | 62.32 | 61.43 |
| AT3G19130.1 | Thale cress | nucleus | 64.01 | 60.92 |
| CDX99265 | Canola | nucleus | 62.32 | 60.85 |
| CDX92304 | Canola | nucleus | 62.32 | 60.85 |
| Bra022389.1-P | Field mustard | nucleus | 62.32 | 60.56 |
| Bra040663.1-P | Field mustard | nucleus | 54.35 | 60.48 |
| Bra001735.1-P | Field mustard | nucleus | 59.9 | 60.19 |
| CDX82310 | Canola | nucleus | 59.9 | 60.19 |
| CDY18570 | Canola | nucleus | 62.8 | 59.91 |
| CDX95462 | Canola | nucleus | 62.8 | 59.91 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 36.96 | 59.07 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 55.31 | 56.82 |
| AT1G49600.3 | Thale cress | nucleus | 60.87 | 56.0 |
| KXG35789 | Sorghum | nucleus | 58.94 | 55.71 |
| Bra037538.1-P | Field mustard | nucleus | 54.11 | 55.58 |
| Zm00001d020748_P002 | Maize | plasma membrane | 57.97 | 55.43 |
| HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 57.73 | 55.2 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 19.57 | 55.1 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 56.04 | 54.72 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 48.31 | 52.77 |
| Os04t0449900-01 | Rice | plastid | 49.03 | 52.45 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 54.35 | 51.02 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 49.52 | 49.16 |
| VIT_19s0090g00280.t01 | Wine grape | nucleus | 54.35 | 48.6 |
| VIT_06s0004g02040.t01 | Wine grape | nucleus | 52.17 | 48.54 |
| EES10898 | Sorghum | nucleus | 49.52 | 48.46 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 48.55 | 48.2 |
| TraesCS2D01G315400.2 | Wheat | plastid | 49.28 | 48.11 |
| TraesCS2A01G317700.2 | Wheat | plastid | 49.28 | 48.11 |
| TraesCS2B01G335700.1 | Wheat | plastid | 48.79 | 48.1 |
| HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 47.58 | 46.14 |
| EES05289 | Sorghum | plastid | 47.34 | 45.06 |
| Zm00001d050838_P001 | Maize | plastid | 46.62 | 44.88 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 49.03 | 44.52 |
| Zm00001d025551_P002 | Maize | plastid | 48.07 | 44.03 |
| Bra014216.1-P | Field mustard | nucleus | 56.52 | 40.91 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 46.38 | 40.51 |
| VIT_09s0002g00880.t01 | Wine grape | mitochondrion, nucleus | 27.05 | 26.67 |
| VIT_11s0016g00700.t01 | Wine grape | mitochondrion, nucleus | 26.57 | 26.07 |
| VIT_04s0008g02930.t01 | Wine grape | nucleus | 24.64 | 25.69 |
| VIT_04s0043g01000.t01 | Wine grape | cytosol, extracellular, mitochondrion | 6.52 | 18.49 |
| VIT_09s0002g03160.t01 | Wine grape | cytosol, nucleus, plastid, vacuole | 20.05 | 17.44 |
| VIT_04s0023g01470.t01 | Wine grape | nucleus | 14.73 | 16.35 |
| VIT_18s0001g02490.t01 | Wine grape | plastid | 25.6 | 16.09 |
| VIT_18s0001g10170.t01 | Wine grape | cytosol | 22.95 | 14.84 |
| VIT_07s0031g00210.t01 | Wine grape | cytosol | 23.43 | 14.83 |
| VIT_08s0007g04380.t01 | Wine grape | cytosol | 21.74 | 14.2 |
| VIT_03s0063g00070.t01 | Wine grape | cytosol, plastid | 22.71 | 11.94 |
| VIT_18s0001g10190.t01 | Wine grape | cytosol, mitochondrion | 1.21 | 4.0 |
| VIT_18s0001g10220.t01 | Wine grape | cytosol | 0.0 | 0.0 |
| VIT_18s0001g10210.t01 | Wine grape | cytosol | 0.0 | 0.0 |
Protein Annotations
| EntrezGene:100258930 | wikigene:100258930 | MapMan:16.9.4 | Gene3D:3.30.70.330 | ProteinID:CCB56896 | ProteinID:CCB56896.1 |
| UniProt:F6HQD9 | EMBL:FN596006 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | EntrezGene:LOC100258930 | wikigene:LOC100258930 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR43955 | PANTHER:PTHR43955:SF6 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | TIGR:TC55147 | UniParc:UPI0002108852 | ArrayExpress:VIT_03s0063g00850 | EnsemblPlantsGene:VIT_03s0063g00850 | EnsemblPlants:VIT_03s0063g00850.t01 |
| unigene:Vvi.7506 | RefSeq:XP_002285031 | RefSeq:XP_002285031.1 | RefSeq:XP_010647773.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr3:+:4306472..4311394
Molecular Weight (calculated)
45943.2 Da
IEP (calculated)
6.858
GRAVY (calculated)
-0.765
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTSNGGDMS QDHQQWMQQQ QQQQQQQQQW MAMQYPAAAM VMQHQMMYPQ HYMPYHHPQP PQQYQNQPPQ HQMHGSTDEI KTLWVGDLHQ WMDDNYLRTC
101: FGHTGEVSSI KIIRNKQTGQ SEGYGFVEFF SRATAEKILH SYNGTLMPNT EQPFRLNWAT FSTGDRRTDA GSDLSIFVGD LASDVTDALL QETFATRYPS
201: VKGAKVVTDS NTGRSKGYGF VRFGDENERS RAMNEMNGIY CSSRPMRIGV ATPKKASGYQ QQYSSQALVL AGGNASNGAV AQGSQANGDS TNTTIFVGGL
301: DSEVTDEDLR QSFSQFGEVV SVKIPVGKGC GFVQFANRNS AEDALQRLNG TVIGKQTVRL SWGRNPASKQ WRNDSNNQWN GAYYGGQGYG GGYGYAMPQN
401: DPNMYAAAAT YGAS
101: FGHTGEVSSI KIIRNKQTGQ SEGYGFVEFF SRATAEKILH SYNGTLMPNT EQPFRLNWAT FSTGDRRTDA GSDLSIFVGD LASDVTDALL QETFATRYPS
201: VKGAKVVTDS NTGRSKGYGF VRFGDENERS RAMNEMNGIY CSSRPMRIGV ATPKKASGYQ QQYSSQALVL AGGNASNGAV AQGSQANGDS TNTTIFVGGL
301: DSEVTDEDLR QSFSQFGEVV SVKIPVGKGC GFVQFANRNS AEDALQRLNG TVIGKQTVRL SWGRNPASKQ WRNDSNNQWN GAYYGGQGYG GGYGYAMPQN
401: DPNMYAAAAT YGAS
001: MQTTNGSDST LATSGATPPN QQTPPPPQQW QQQQQQQQQW MAAMQYPPAA AMMMMQQQQM LMYPHQYVPY NQGPYQQHHP QLHQYGSYQQ HQHQQHKAID
101: RGSGDDVKTL WVGDLLHWMD ETYLHSCFSH TGEVSSVKVI RNKLTSQSEG YGFVEFLSRA AAEEVLQNYS GSVMPNSDQP FRINWASFST GEKRAVENGP
201: DLSVFVGDLS PDVTDVLLHE TFSDRYPSVK SAKVVIDSNT GRSKGYGFVR FGDENERSRA LTEMNGAYCS NRQMRVGIAT PKRAIANQQQ HSSQAVILAG
301: GHGSNGSMGY GSQSDGESTN ATIFVGGIDP DVIDEDLRQP FSQFGEVVSV KIPVGKGCGF VQFADRKSAE DAIESLNGTV IGKNTVRLSW GRSPNKQWRG
401: DSGQQWNGGY SRGHGYNNGG GYANHHDSNN YHGEN
101: RGSGDDVKTL WVGDLLHWMD ETYLHSCFSH TGEVSSVKVI RNKLTSQSEG YGFVEFLSRA AAEEVLQNYS GSVMPNSDQP FRINWASFST GEKRAVENGP
201: DLSVFVGDLS PDVTDVLLHE TFSDRYPSVK SAKVVIDSNT GRSKGYGFVR FGDENERSRA LTEMNGAYCS NRQMRVGIAT PKRAIANQQQ HSSQAVILAG
301: GHGSNGSMGY GSQSDGESTN ATIFVGGIDP DVIDEDLRQP FSQFGEVVSV KIPVGKGCGF VQFADRKSAE DAIESLNGTV IGKNTVRLSW GRSPNKQWRG
401: DSGQQWNGGY SRGHGYNNGG GYANHHDSNN YHGEN
Arabidopsis Description
RBP47BPolyadenylate-binding protein RBP47B [Source:UniProtKB/Swiss-Prot;Acc:Q0WW84]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.