Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018813.1-P | Field mustard | mitochondrion, nucleus | 90.44 | 99.49 |
| CDY50959 | Canola | nucleus | 99.07 | 98.84 |
| CDY16528 | Canola | nucleus | 91.84 | 92.92 |
| CDY32840 | Canola | nucleus | 90.44 | 92.16 |
| CDY68866 | Canola | nucleus | 86.95 | 89.88 |
| CDY29341 | Canola | nucleus | 87.65 | 89.74 |
| AT1G49600.3 | Thale cress | nucleus | 82.75 | 78.89 |
| CDY22988 | Canola | nucleus | 75.29 | 76.9 |
| CDX95462 | Canola | nucleus | 77.39 | 76.5 |
| CDY18570 | Canola | nucleus | 77.16 | 76.27 |
| CDX82310 | Canola | nucleus | 72.96 | 75.97 |
| CDX92304 | Canola | nucleus | 75.06 | 75.94 |
| CDX99265 | Canola | nucleus | 75.06 | 75.94 |
| VIT_03s0063g00850.t01 | Wine grape | nucleus | 62.7 | 64.98 |
| Solyc01g108500.2.1 | Tomato | nucleus | 61.54 | 63.92 |
| GSMUA_Achr9P15210_001 | Banana | nucleus | 45.69 | 62.82 |
| PGSC0003DMT400066648 | Potato | nucleus | 61.31 | 62.62 |
| GSMUA_Achr3P06840_001 | Banana | nucleus | 45.45 | 62.5 |
| KRH50251 | Soybean | nucleus | 61.07 | 60.79 |
| KRH71168 | Soybean | nucleus | 60.84 | 60.56 |
| GSMUA_Achr10P... | Banana | nucleus | 44.29 | 60.51 |
| Solyc10g050860.1.1 | Tomato | nucleus | 60.14 | 60.28 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 43.59 | 59.74 |
| TraesCS5B01G241400.1 | Wheat | nucleus | 46.62 | 58.48 |
| TraesCS5A01G243500.1 | Wheat | nucleus | 46.39 | 58.19 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 46.39 | 58.19 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 34.03 | 56.37 |
| CDY52067 | Canola | nucleus | 51.52 | 52.74 |
| CDX95176 | Canola | nucleus | 51.28 | 52.51 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 17.95 | 52.38 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 45.69 | 51.72 |
| CDY06734 | Canola | mitochondrion | 36.6 | 51.48 |
| Os04t0449900-01 | Rice | plastid | 46.15 | 51.16 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 48.02 | 51.12 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 49.42 | 50.0 |
| KXG35789 | Sorghum | nucleus | 50.82 | 49.77 |
| HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 50.12 | 49.65 |
| Zm00001d020748_P002 | Maize | plasma membrane | 49.88 | 49.42 |
| CDY34835 | Canola | nucleus | 44.52 | 48.6 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 47.09 | 48.44 |
| CDX89287 | Canola | nucleus | 46.15 | 47.83 |
| TraesCS2A01G317700.2 | Wheat | plastid | 47.09 | 47.64 |
| TraesCS2D01G315400.2 | Wheat | plastid | 47.09 | 47.64 |
| TraesCS2B01G335700.1 | Wheat | plastid | 46.62 | 47.62 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 46.15 | 47.48 |
| EES10898 | Sorghum | nucleus | 46.62 | 47.28 |
| CDY14290 | Canola | nucleus | 45.22 | 46.52 |
| CDY29263 | Canola | nucleus | 45.22 | 46.3 |
| CDY17286 | Canola | nucleus | 43.59 | 46.17 |
| CDY66423 | Canola | nucleus | 45.69 | 46.01 |
| EES05289 | Sorghum | plastid | 46.62 | 45.98 |
| CDY46671 | Canola | nucleus | 45.92 | 45.92 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 45.22 | 45.54 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 46.62 | 45.35 |
| Zm00001d050838_P001 | Maize | plastid | 45.45 | 45.35 |
| HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 44.29 | 44.5 |
| CDY19874 | Canola | nucleus | 43.36 | 44.39 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 46.62 | 43.86 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 46.85 | 42.41 |
| Zm00001d025551_P002 | Maize | plastid | 44.52 | 42.26 |
| CDY13992 | Canola | nucleus | 39.86 | 40.81 |
| CDX92537 | Canola | nucleus | 39.39 | 40.33 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 39.39 | 39.3 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 39.39 | 39.3 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 44.99 | 38.07 |
| CDY63384 | Canola | mitochondrion, nucleus | 26.11 | 26.79 |
| CDY51403 | Canola | nucleus | 25.17 | 25.71 |
| CDY61476 | Canola | nucleus | 24.94 | 25.54 |
| CDY02486 | Canola | nucleus | 24.94 | 25.48 |
| CDY33092 | Canola | nucleus | 25.17 | 25.41 |
| CDY67365 | Canola | plastid | 15.62 | 22.95 |
| CDX81822 | Canola | mitochondrion, nucleus | 26.11 | 20.55 |
| CDY72408 | Canola | plastid | 3.5 | 16.13 |
| CDY59539 | Canola | nucleus | 13.29 | 15.57 |
| CDY66740 | Canola | nucleus | 13.52 | 15.22 |
| CDY67617 | Canola | nucleus | 13.52 | 15.22 |
| CDY43894 | Canola | nucleus | 12.82 | 15.11 |
| CDX69025 | Canola | nucleus, plastid | 21.45 | 15.06 |
| CDY57754 | Canola | nucleus | 7.46 | 15.02 |
| CDX75397 | Canola | nucleus, plastid | 21.45 | 14.94 |
| CDY51957 | Canola | cytosol, plastid | 21.45 | 14.86 |
| CDX89664 | Canola | cytosol | 21.21 | 14.82 |
| CDY62723 | Canola | cytosol | 21.21 | 14.75 |
| CDY38939 | Canola | nucleus | 21.91 | 14.6 |
| CDX89562 | Canola | nucleus | 21.91 | 14.57 |
| CDX71223 | Canola | cytosol | 21.45 | 14.42 |
| CDX79296 | Canola | plastid | 6.06 | 14.21 |
| CDY56198 | Canola | cytosol | 16.08 | 14.11 |
| CDY54068 | Canola | cytosol | 20.75 | 13.63 |
| CDY51045 | Canola | cytosol | 20.51 | 13.48 |
| CDY36634 | Canola | nucleus | 20.28 | 13.41 |
| CDY30168 | Canola | cytosol | 16.55 | 13.2 |
| CDY46079 | Canola | nucleus | 19.35 | 13.2 |
| CDY03685 | Canola | nucleus | 19.58 | 13.06 |
| CDY41472 | Canola | cytosol, plastid | 19.35 | 12.95 |
| CDX72826 | Canola | plastid | 20.51 | 12.87 |
| CDX96344 | Canola | plastid | 20.51 | 12.87 |
| CDY37935 | Canola | nucleus | 19.35 | 12.75 |
| CDY67921 | Canola | nucleus | 19.11 | 12.71 |
| CDY36684 | Canola | plastid | 19.58 | 12.63 |
| CDY33264 | Canola | mitochondrion, nucleus | 5.83 | 12.5 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 18.41 | 12.19 |
| CDX92325 | Canola | nucleus | 5.83 | 7.76 |
| CDY67364 | Canola | nucleus | 5.13 | 7.51 |
| CDY37229 | Canola | cytosol | 2.1 | 4.23 |
| CDX91689 | Canola | nucleus | 2.8 | 3.93 |
| CDX79295 | Canola | cytosol, plastid | 0.0 | 0.0 |
| CDY08990 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | GO:A0A078GRP5 | UniProt:A0A078GRP5 | EnsemblPlants:CDY28101 | ProteinID:CDY28101 |
| ProteinID:CDY28101.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00039063001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 |
| PANTHER:PTHR43955:SF6 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EC6181 |
| SEG:seg | : | : | : | : | : |
Description
BnaC06g02820DBnaC06g02820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRP5]
Coordinates
chrLK032214:+:201125..204555
Molecular Weight (calculated)
46761.9 Da
IEP (calculated)
5.993
GRAVY (calculated)
-0.712
Length
429 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTTNNGPDS SSAATTPPLQ QTTPPPPQQQ QQWQQQQQWM AMMQHPAAMA MMQQQQMMMY PHQYAPYGQG HYQHPQFQYA AYQQQQQQNH QQRGGSGGDD
101: VKTLWVGDLL HWMDETYLHT CFSHTNEVSS VKVIRNKQTS QSEGYGFVEF LSRSAAEEVL QSYSGVTMPN AEQPFRLNWA SFSTGEKRAS ENGGPDLSIF
201: VGDLAPDVTD ATLLETFAGY QSVKGAKVVI DSNTGRSKGY GFVRFGDESE RSRALTEMNG AFCSSRQMRV GIATPKRAAA YGQQNGSQAL TLAGGHGGNG
301: SMSDGDSNNS TIFVGGLDAD VTEDDLMQPF SQFGEVVSVK IPVGKGCGFV QFGNRQSAEE AIGSLNGTVI GKNTVRLSWG RSPNRQWRGD SGHQWNGGYS
401: RGQGYNNNGY ANQESNMYAT EAAAVPGAS
101: VKTLWVGDLL HWMDETYLHT CFSHTNEVSS VKVIRNKQTS QSEGYGFVEF LSRSAAEEVL QSYSGVTMPN AEQPFRLNWA SFSTGEKRAS ENGGPDLSIF
201: VGDLAPDVTD ATLLETFAGY QSVKGAKVVI DSNTGRSKGY GFVRFGDESE RSRALTEMNG AFCSSRQMRV GIATPKRAAA YGQQNGSQAL TLAGGHGGNG
301: SMSDGDSNNS TIFVGGLDAD VTEDDLMQPF SQFGEVVSVK IPVGKGCGFV QFGNRQSAEE AIGSLNGTVI GKNTVRLSWG RSPNRQWRGD SGHQWNGGYS
401: RGQGYNNNGY ANQESNMYAT EAAAVPGAS
001: MQTPNNNGST DSVLPPTSAG TTPPPPLQQS TPPPQQQQQQ QWQQQQQWMA AMQQYPAAAM AMMQQQQMMM YPHPQYAPYN QAAYQQHPQF QYAAYQQQQQ
101: QHHQSQQQPR GGSGGDDVKT LWVGDLLHWM DETYLHTCFS HTNEVSSVKV IRNKQTCQSE GYGFVEFLSR SAAEEALQSF SGVTMPNAEQ PFRLNWASFS
201: TGEKRASENG PDLSIFVGDL APDVSDAVLL ETFAGRYPSV KGAKVVIDSN TGRSKGYGFV RFGDENERSR AMTEMNGAFC SSRQMRVGIA TPKRAAAYGQ
301: QNGSQALTLA GGHGGNGSMS DGESNNSTIF VGGLDADVTE EDLMQPFSDF GEVVSVKIPV GKGCGFVQFA NRQSAEEAIG NLNGTVIGKN TVRLSWGRSP
401: NKQWRSDSGN QWNGGYSRGQ GYNNGYANQD SNMYATAAAA VPGAS
101: QHHQSQQQPR GGSGGDDVKT LWVGDLLHWM DETYLHTCFS HTNEVSSVKV IRNKQTCQSE GYGFVEFLSR SAAEEALQSF SGVTMPNAEQ PFRLNWASFS
201: TGEKRASENG PDLSIFVGDL APDVSDAVLL ETFAGRYPSV KGAKVVIDSN TGRSKGYGFV RFGDENERSR AMTEMNGAFC SSRQMRVGIA TPKRAAAYGQ
301: QNGSQALTLA GGHGGNGSMS DGESNNSTIF VGGLDADVTE EDLMQPFSDF GEVVSVKIPV GKGCGFVQFA NRQSAEEAIG NLNGTVIGKN TVRLSWGRSP
401: NKQWRSDSGN QWNGGYSRGQ GYNNGYANQD SNMYATAAAA VPGAS
Arabidopsis Description
ATRBP47ARNA-binding protein 47A [Source:TAIR;Acc:AT1G49600]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.