Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67617 | Canola | nucleus | 99.74 | 99.74 |
| CDY43894 | Canola | nucleus | 90.03 | 94.23 |
| CDY59539 | Canola | nucleus | 90.03 | 93.72 |
| AT2G18510.1 | Thale cress | nucleus | 84.51 | 88.71 |
| VIT_04s0023g01470.t01 | Wine grape | nucleus | 73.23 | 74.8 |
| KRH27525 | Soybean | nucleus | 71.39 | 74.73 |
| PGSC0003DMT400023075 | Potato | nucleus | 70.87 | 74.38 |
| KRH36396 | Soybean | endoplasmic reticulum | 71.13 | 74.25 |
| Solyc03g118800.2.1 | Tomato | nucleus | 70.6 | 73.9 |
| Os10t0457000-01 | Rice | nucleus | 68.5 | 73.52 |
| PGSC0003DMT400014744 | Potato | nucleus | 69.82 | 73.08 |
| GSMUA_Achr5P20140_001 | Banana | nucleus | 69.82 | 72.68 |
| EER94133 | Sorghum | nucleus | 66.93 | 71.83 |
| Zm00001d014094_P002 | Maize | extracellular, plasma membrane | 66.4 | 70.87 |
| Zm00001d032807_P001 | Maize | nucleus | 66.4 | 70.47 |
| HORVU1Hr1G038240.1 | Barley | nucleus | 66.4 | 68.75 |
| TraesCS1D01G142300.1 | Wheat | nucleus | 66.14 | 68.48 |
| TraesCS1B01G160900.1 | Wheat | nucleus | 65.88 | 68.21 |
| TraesCS1A01G143500.1 | Wheat | nucleus | 65.62 | 67.93 |
| CDY67365 | Canola | plastid | 18.9 | 24.66 |
| CDY72408 | Canola | plastid | 5.77 | 23.66 |
| CDY38939 | Canola | nucleus | 28.87 | 17.08 |
| CDX89562 | Canola | nucleus | 28.87 | 17.05 |
| CDY06734 | Canola | mitochondrion | 13.65 | 17.05 |
| CDY46079 | Canola | nucleus | 28.08 | 17.01 |
| CDY51957 | Canola | cytosol, plastid | 27.56 | 16.96 |
| CDY62723 | Canola | cytosol | 27.3 | 16.86 |
| CDY67921 | Canola | nucleus | 28.35 | 16.74 |
| CDX75397 | Canola | nucleus, plastid | 27.03 | 16.72 |
| CDX69025 | Canola | nucleus, plastid | 26.77 | 16.69 |
| CDY51403 | Canola | nucleus | 18.37 | 16.67 |
| CDY63384 | Canola | mitochondrion, nucleus | 18.11 | 16.51 |
| CDY33092 | Canola | nucleus | 18.37 | 16.47 |
| CDX89664 | Canola | cytosol | 26.25 | 16.29 |
| CDY61476 | Canola | nucleus | 17.85 | 16.23 |
| CDY02486 | Canola | nucleus | 17.85 | 16.19 |
| CDY33264 | Canola | mitochondrion, nucleus | 8.4 | 16.0 |
| CDY54068 | Canola | cytosol | 27.3 | 15.93 |
| CDY51045 | Canola | cytosol | 27.3 | 15.93 |
| CDX71223 | Canola | cytosol | 25.98 | 15.52 |
| CDY13992 | Canola | nucleus | 17.06 | 15.51 |
| CDY52067 | Canola | nucleus | 16.8 | 15.27 |
| CDX92537 | Canola | nucleus | 16.8 | 15.27 |
| CDX95176 | Canola | nucleus | 16.8 | 15.27 |
| CDY34835 | Canola | nucleus | 15.75 | 15.27 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 17.06 | 15.26 |
| CDY46671 | Canola | nucleus | 17.06 | 15.15 |
| CDX89287 | Canola | nucleus | 16.27 | 14.98 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 25.46 | 14.97 |
| CDY36634 | Canola | nucleus | 25.46 | 14.95 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 16.8 | 14.88 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 16.8 | 14.88 |
| CDY17286 | Canola | nucleus | 15.75 | 14.81 |
| CDY29263 | Canola | nucleus | 16.27 | 14.8 |
| CDY14290 | Canola | nucleus | 16.01 | 14.63 |
| CDY36684 | Canola | plastid | 25.46 | 14.59 |
| CDY66423 | Canola | nucleus | 16.01 | 14.32 |
| CDX92304 | Canola | nucleus | 15.75 | 14.15 |
| CDY37935 | Canola | nucleus | 24.15 | 14.13 |
| CDY19874 | Canola | nucleus | 15.49 | 14.08 |
| CDX99265 | Canola | nucleus | 15.49 | 13.92 |
| CDX72826 | Canola | plastid | 24.93 | 13.89 |
| CDX96344 | Canola | plastid | 24.93 | 13.89 |
| CDY41472 | Canola | cytosol, plastid | 23.36 | 13.88 |
| CDY32840 | Canola | nucleus | 15.22 | 13.78 |
| CDY68866 | Canola | nucleus | 14.96 | 13.73 |
| CDY03685 | Canola | nucleus | 23.1 | 13.69 |
| CDY16528 | Canola | nucleus | 15.22 | 13.68 |
| CDX82310 | Canola | nucleus | 14.7 | 13.59 |
| CDY22988 | Canola | nucleus | 14.96 | 13.57 |
| CDY28101 | Canola | nucleus | 15.22 | 13.52 |
| CDY50959 | Canola | nucleus | 15.22 | 13.49 |
| CDY29341 | Canola | nucleus | 14.7 | 13.37 |
| CDX95462 | Canola | nucleus | 15.22 | 13.36 |
| CDY18570 | Canola | nucleus | 14.96 | 13.13 |
| CDX81822 | Canola | mitochondrion, nucleus | 18.37 | 12.84 |
| CDY30168 | Canola | cytosol | 17.85 | 12.64 |
| CDX79296 | Canola | plastid | 6.04 | 12.57 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 16.54 | 12.43 |
| CDY56198 | Canola | cytosol | 15.75 | 12.27 |
| CDY57754 | Canola | nucleus | 6.3 | 11.27 |
| CDY37229 | Canola | cytosol | 6.04 | 10.8 |
| CDX91689 | Canola | nucleus | 7.35 | 9.18 |
| CDY67364 | Canola | nucleus | 6.82 | 8.87 |
| CDY08990 | Canola | cytosol | 1.84 | 7.07 |
| CDX79295 | Canola | cytosol, plastid | 1.57 | 6.0 |
| CDX92325 | Canola | nucleus | 2.62 | 3.11 |
Protein Annotations
| MapMan:16.4.1.2.4.4 | Gene3D:3.30.70.330 | GO:A0A078JJY0 | UniProt:A0A078JJY0 | EnsemblPlants:CDY66740 | ProteinID:CDY66740 |
| ProteinID:CDY66740.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00055657001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44799 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:SF3B4_RRM1 | InterPro:SF3B4_RRM2 | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0004EAE910 | SEG:seg | : | : | : | : |
Description
BnaCnng52140DBnaCnng52140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JJY0]
Coordinates
chrLK035435:-:1359..3561
Molecular Weight (calculated)
41662.6 Da
IEP (calculated)
8.032
GRAVY (calculated)
-0.728
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTRIAPGVG ANLLGQHSAE RNQEATVYVG NLDPQLSEEL LWELFVQAGP VVNVYVPKDR VTGLHLGYGF IEFRSEEDAD YAIKILNMIK IHGKPIRVNK
101: ASQDKKSLDV GANLFIGNLD PDVDEKILYD TFSAFGGIAS NPKIMRDPDT GNSRGFGFIS YDSFDASDAA IEAMTGQYLC NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPITQKSRPH TLFASGPPTH PNAPQANGIP RPFVNGGMPP VSIPGPRPTP PPPPPQVYQT QPPPSWQPQQ HQQQHGLAVP PPMQFRPTQG
301: MPPPPPPQFL HHQQGFGGPR PPPPPPQAMG MHQHGWPPQH MQQGGPPPPQ HMQQGGPPPP QHMQHHHPHM SMPPPPPPHQ G
101: ASQDKKSLDV GANLFIGNLD PDVDEKILYD TFSAFGGIAS NPKIMRDPDT GNSRGFGFIS YDSFDASDAA IEAMTGQYLC NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPITQKSRPH TLFASGPPTH PNAPQANGIP RPFVNGGMPP VSIPGPRPTP PPPPPQVYQT QPPPSWQPQQ HQQQHGLAVP PPMQFRPTQG
301: MPPPPPPQFL HHQQGFGGPR PPPPPPQAMG MHQHGWPPQH MQQGGPPPPQ HMQQGGPPPP QHMQHHHPHM SMPPPPPPHQ G
001: MTTRIAPGVG ANLLGQHSAE RNQDATVYVG GLDAQLSEEL LWELFVQAGP VVNVYVPKDR VTNLHQNYGF IEYRSEEDAD YAIKVLNMIK LHGKPIRVNK
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIAS NPKIMRDPDT GNSRGFGFIS YDSFEASDAA IESMTGQYLS NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPTAQKSRPH TLFAMGPPSS APQVNGLPRP FANGSMQPVP IPAPRQPPPP PPQVYQTQPP SWPSQPQQHS MVPPPMQFRP PQGMPPPPPP
301: QFLNHQQGFG GPRPPPPPQA MGMHQHGGWP PQHMQQQGGP PQQQQPPYQH HHMSMPPPPP HQG
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIAS NPKIMRDPDT GNSRGFGFIS YDSFEASDAA IESMTGQYLS NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPTAQKSRPH TLFAMGPPSS APQVNGLPRP FANGSMQPVP IPAPRQPPPP PPQVYQTQPP SWPSQPQQHS MVPPPMQFRP PQGMPPPPPP
301: QFLNHQQGFG GPRPPPPPQA MGMHQHGGWP PQHMQQQGGP PQQQQPPYQH HHMSMPPPPP HQG
Arabidopsis Description
emb2444Emb2444 [Source:UniProtKB/TrEMBL;Acc:A0A178VZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.