Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
25464976
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400014744 | Potato | nucleus | 98.63 | 98.63 |
| PGSC0003DMT400023075 | Potato | nucleus | 96.98 | 97.25 |
| VIT_04s0023g01470.t01 | Wine grape | nucleus | 81.04 | 79.09 |
| KRH27525 | Soybean | nucleus | 77.47 | 77.47 |
| KRH36396 | Soybean | endoplasmic reticulum | 77.47 | 77.26 |
| GSMUA_Achr5P20140_001 | Banana | nucleus | 76.65 | 76.23 |
| Os10t0457000-01 | Rice | nucleus | 72.8 | 74.65 |
| EER94133 | Sorghum | nucleus | 71.43 | 73.24 |
| Zm00001d032807_P001 | Maize | nucleus | 71.98 | 72.98 |
| HORVU1Hr1G038240.1 | Barley | nucleus | 73.35 | 72.55 |
| Zm00001d014094_P002 | Maize | extracellular, plasma membrane | 71.15 | 72.55 |
| TraesCS1D01G142300.1 | Wheat | nucleus | 73.08 | 72.28 |
| TraesCS1B01G160900.1 | Wheat | nucleus | 72.8 | 72.01 |
| TraesCS1A01G143500.1 | Wheat | nucleus | 72.53 | 71.74 |
| AT2G18510.1 | Thale cress | nucleus | 71.15 | 71.35 |
| CDY43894 | Canola | nucleus | 70.88 | 70.88 |
| Bra039603.1-P | Field mustard | nucleus | 70.88 | 70.88 |
| CDY59539 | Canola | nucleus | 71.15 | 70.77 |
| CDY66740 | Canola | nucleus | 73.9 | 70.6 |
| Bra037217.1-P | Field mustard | nucleus | 73.63 | 70.34 |
| CDY67617 | Canola | nucleus | 73.63 | 70.34 |
| Solyc07g042180.2.1 | Tomato | nucleus | 19.51 | 17.84 |
| Solyc01g107870.2.1 | Tomato | extracellular | 31.04 | 17.57 |
| Solyc03g122180.2.1 | Tomato | nucleus | 19.51 | 17.03 |
| Solyc12g009230.1.1 | Tomato | mitochondrion, nucleus | 18.68 | 16.96 |
| Solyc06g063000.2.1 | Tomato | nucleus | 18.96 | 16.55 |
| Solyc12g088720.1.1 | Tomato | plastid | 30.22 | 16.52 |
| Solyc11g065880.1.1 | Tomato | nucleus | 17.86 | 15.59 |
| Solyc02g080420.2.1 | Tomato | extracellular, nucleus, plastid | 17.58 | 15.5 |
| Solyc10g050860.1.1 | Tomato | nucleus | 17.86 | 15.19 |
| Solyc10g005260.2.1 | Tomato | nucleus | 17.03 | 15.09 |
| Solyc01g108500.2.1 | Tomato | nucleus | 17.03 | 15.01 |
| Solyc03g031720.2.1 | Tomato | nucleus | 16.48 | 14.81 |
| Solyc04g079310.2.1 | Tomato | nucleus | 17.58 | 14.19 |
| Solyc09g008620.1.1 | Tomato | cytosol | 23.35 | 14.05 |
| Solyc10g085750.1.1 | Tomato | nucleus | 23.9 | 13.99 |
| Solyc07g064510.2.1 | Tomato | plastid | 15.66 | 13.9 |
| Solyc06g062680.1.1 | Tomato | cytosol | 16.48 | 11.3 |
Protein Annotations
| MapMan:16.4.1.2.4.4 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | UniProt:K4BM29 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PRINTS:PR01217 |
| PFscan:PS50102 | PANTHER:PTHR44799 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:SF3B4_RRM1 | InterPro:SF3B4_RRM2 |
| SMART:SM00360 | SUPFAM:SSF54928 | EnsemblPlantsGene:Solyc03g118800.2 | EnsemblPlants:Solyc03g118800.2.1 | UniParc:UPI00027661A5 | SEG:seg |
Description
No Description!
Coordinates
chr3:+:67617114..67621200
Molecular Weight (calculated)
39193.9 Da
IEP (calculated)
8.402
GRAVY (calculated)
-0.525
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTRIAPGVG ANLLGQHAAE RNQDATAYVG NLDPQISEEL LWELFVQAGP VVNVYVPKDR VTNAHQGYGF VEFRSEEDAD YAIKVLNMIK LYGKPIRVNK
101: ASQDKKSVDV GANLFVGNLD PDVDEKLLYD TFSAFGVVVS NPKIMRDPET GNSRGFGFIS YDSFDASDAA IEAMNGQYLC NRQITVSYAY KKDTKGERHG
201: TPAERVLASS NPGTQKNRPH TMFASGPPTL PGVPQANGAV GAPVPPRPFA NGPMPPAPVP AIRPPPMQPN IYPPMQMPPP QAWQGQPMPP PVAGGIPQQQ
301: MQFRGMPPPP PPQLAPPLNR PPPPPAAMGG NVWRPPPPPQ HFNGGHHAMP HMSMQPPPPP PAPG
101: ASQDKKSVDV GANLFVGNLD PDVDEKLLYD TFSAFGVVVS NPKIMRDPET GNSRGFGFIS YDSFDASDAA IEAMNGQYLC NRQITVSYAY KKDTKGERHG
201: TPAERVLASS NPGTQKNRPH TMFASGPPTL PGVPQANGAV GAPVPPRPFA NGPMPPAPVP AIRPPPMQPN IYPPMQMPPP QAWQGQPMPP PVAGGIPQQQ
301: MQFRGMPPPP PPQLAPPLNR PPPPPAAMGG NVWRPPPPPQ HFNGGHHAMP HMSMQPPPPP PAPG
001: MTTRIAPGVG ANLLGQHSAE RNQDATVYVG GLDAQLSEEL LWELFVQAGP VVNVYVPKDR VTNLHQNYGF IEYRSEEDAD YAIKVLNMIK LHGKPIRVNK
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIAS NPKIMRDPDT GNSRGFGFIS YDSFEASDAA IESMTGQYLS NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPTAQKSRPH TLFAMGPPSS APQVNGLPRP FANGSMQPVP IPAPRQPPPP PPQVYQTQPP SWPSQPQQHS MVPPPMQFRP PQGMPPPPPP
301: QFLNHQQGFG GPRPPPPPQA MGMHQHGGWP PQHMQQQGGP PQQQQPPYQH HHMSMPPPPP HQG
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIAS NPKIMRDPDT GNSRGFGFIS YDSFEASDAA IESMTGQYLS NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPTAQKSRPH TLFAMGPPSS APQVNGLPRP FANGSMQPVP IPAPRQPPPP PPQVYQTQPP SWPSQPQQHS MVPPPMQFRP PQGMPPPPPP
301: QFLNHQQGFG GPRPPPPPQA MGMHQHGGWP PQHMQQQGGP PQQQQPPYQH HHMSMPPPPP HQG
Arabidopsis Description
emb2444Emb2444 [Source:UniProtKB/TrEMBL;Acc:A0A178VZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.