Factsheet for Solyc06g062680.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012508	Potato	nucleus	19.4	83.06
Solyc12g088720.1.1	Tomato	plastid	23.73	18.92
Solyc01g107870.2.1	Tomato	extracellular	20.15	16.64
Solyc03g118800.2.1	Tomato	nucleus	11.3	16.48
Os09t0115400-01	Rice	nucleus	20.34	16.31
Os04t0504800-01	Rice	plasma membrane	19.77	15.93
GSMUA_Achr9P00990_001	Banana	cytosol	19.4	15.82
TraesCS7A01G288700.1	Wheat	nucleus	19.59	15.71
TraesCS5D01G167000.1	Wheat	nucleus, unclear	19.21	15.67
TraesCS5B01G159400.1	Wheat	cytosol	19.21	15.67
TraesCS5A01G161800.2	Wheat	nucleus	19.21	15.67
TraesCS2A01G359000.1	Wheat	cytosol	19.59	15.64
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	19.4	15.61
KXG35258	Sorghum	cytosol	19.21	15.55
HORVU5Hr1G050560.1	Barley	plastid	20.53	15.53
TraesCS2D01G358000.1	Wheat	cytosol	19.4	15.51
TraesCS2B01G378400.1	Wheat	nucleus	19.4	15.49
Zm00001d019824_P004	Maize	cytosol	19.02	15.4
TraesCS7D01G287900.1	Wheat	cytosol	18.46	15.36
GSMUA_Achr4P20270_001	Banana	cytosol	18.46	15.24
Zm00001d025801_P005	Maize	cytosol, plastid	18.64	15.18
Zm00001d005276_P007	Maize	cytosol	18.64	15.14
GSMUA_Achr4P09890_001	Banana	cytosol	18.27	14.88
TraesCS7B01G182800.3	Wheat	cytosol	18.83	14.81
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	19.96	14.8
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	18.08	14.72
EES12460	Sorghum	plastid	18.08	14.46
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	16.38	14.24
GSMUA_AchrUn_...	Banana	cytosol	17.33	14.11
Solyc10g005260.2.1	Tomato	nucleus	9.98	12.9
Solyc02g080420.2.1	Tomato	extracellular, nucleus, plastid	9.98	12.83
Solyc10g085750.1.1	Tomato	nucleus	14.69	12.54
Solyc10g050860.1.1	Tomato	nucleus	9.6	11.92
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	14.12	11.57
GSMUA_Achr7P05430_001	Banana	nucleus	19.59	11.5
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	8.47	11.22
Solyc01g108500.2.1	Tomato	nucleus	8.66	11.14
Solyc03g031720.2.1	Tomato	nucleus	8.47	11.11
Solyc09g008620.1.1	Tomato	cytosol	12.24	10.74
Solyc07g064510.2.1	Tomato	plastid	8.29	10.73
Solyc06g063000.2.1	Tomato	nucleus	8.29	10.55
Solyc04g079310.2.1	Tomato	nucleus	8.85	10.42
Solyc03g122180.2.1	Tomato	nucleus	8.1	10.31
Solyc07g042180.2.1	Tomato	nucleus	7.72	10.3
Solyc11g065880.1.1	Tomato	nucleus	7.72	9.83

Protein Annotations

MapMan:12.2.6	MapMan:17.4.2.5	Gene3D:3.30.1120.90	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:IPR000504	InterPro:IPR012677
UniProt:K4C6Z9	InterPro:NAP-like_sf	InterPro:NAP_family	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00956
PFscan:PS50102	PANTHER:PTHR24012	PANTHER:PTHR24012:SF620	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF143113	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc06g062680.1	EnsemblPlants:Solyc06g062680.1.1	UniParc:UPI000276694D	SEG:seg

Description

No Description!

Coordinates

chr6:-:39562197..39566653

Molecular Weight (calculated)

60032.0 Da

IEP (calculated)

9.240

GRAVY (calculated)

-0.499

Length

531 amino acids

Sequence
(BLAST)

001: MSTLDIYQSH LYPFTADAVA SYAEYRAGLE IKQKDNLQKF SGSPSLKLKS LSPQVRKRVE ALKNLQGQPA ALKALLLEEK AVLKAGYEKL HESLHTKSER
101: DTLQALFLKE KTVLEAKYEK LHESLHMKRY EIVNGVVEVK GDNMETGDEK GVPNFWLTAL KSYAKREEED IKWCRVDHPK GIKLDFFFDT NPFFKNSVLT
201: KTCHKRVNMA MAKDVTWTDI EWFPGECLTK KIVECNPNKR LITAKPMIRT VDCQSFFKQP PVTELPYMQA DYEDYEIGSI IRDKIIPSTQ YCGLLDYDGK
301: REEEEKPEKK IQGQHRSPVT RGIGVAAAAA TGGTATTAVP GGVANQFKPT SLYIGDLDIN VTHTQLHQLL NQAGQVISVR ICRDFSTRRS LGYGFINYSN
401: PQDAARAMEM LDFTPVNGKS IRVKRSHRDP NSPKNRRANL FIRNLDKSIE IEALHDTFSN FGYICSCKIV TDSNGQSKGY GFYNLTMMNP LKVAIDKSNG
501: VLINGRQVYV AHALCKEKSG IGTSWGRTME W

Best Arabidopsis Sequence Match ( AT4G34110.1 )
(BLAST)

001: MAQVQLQGQT PNGSTAAVTS APATSGGATA TQFGNTSLYV GDLDFNVTDS QLFDAFGQMG TVVTVRVCRD LVTRRSLGYG YVNFTNPQDA ARAIQELNYI
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS

Arabidopsis Description

PAB2Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A178UWB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.