Factsheet for Os09t0115400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 23303719
golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os08t0542900-01
Os11t0248200-01
Os12t0225100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34110.1	Os08t0542900-01	AT2G43970.1	21798944
AT4G34110.1	Os11t0248200-01	AT2G43970.1	21798944
AT4G34110.1	Os12t0225100-01	AT2G43970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G159400.1	Wheat	cytosol	88.82	90.32
TraesCS5D01G167000.1	Wheat	nucleus, unclear	88.67	90.17
TraesCS5A01G161800.2	Wheat	nucleus	88.22	89.71
KXG35258	Sorghum	cytosol	83.69	84.45
Zm00001d005276_P007	Maize	cytosol	82.93	83.94
HORVU5Hr1G050560.1	Barley	plastid	88.67	83.62
Zm00001d019824_P004	Maize	cytosol	82.63	83.38
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	81.27	81.52
VIT_18s0001g10170.t01	Wine grape	cytosol	71.0	73.44
VIT_07s0031g00210.t01	Wine grape	cytosol	71.15	72.02
KRH70673	Soybean	nucleus	70.09	71.6
GSMUA_Achr4P20270_001	Banana	cytosol	69.18	71.23
KRH50336	Soybean	cytosol	69.94	71.12
KRH15385	Soybean	nucleus	69.34	70.4
KRH05656	Soybean	endoplasmic reticulum, nucleus	68.88	69.72
CDY67364	Canola	nucleus	30.36	68.6
Bra013104.1-P	Field mustard	cytosol	63.6	68.34
CDY54068	Canola	cytosol	67.07	67.99
CDY51045	Canola	cytosol	66.92	67.84
Bra018797.1-P	Field mustard	cytosol	66.92	67.84
CDX89664	Canola	cytosol	62.54	67.43
KRH52023	Soybean	cytosol, endoplasmic reticulum	64.05	67.3
AT1G49760.1	Thale cress	cytosol	67.82	66.92
Bra011488.1-P	Field mustard	cytosol, plastid	61.48	66.39
Os04t0504800-01	Rice	plasma membrane	65.86	66.16
CDX71223	Canola	cytosol	63.75	66.14
CDY62723	Canola	cytosol	61.63	66.13
KRH61326	Soybean	cytosol, endoplasmic reticulum	62.84	66.03
CDX69025	Canola	nucleus, plastid	60.88	65.96
Bra034603.1-P	Field mustard	cytosol, plastid	61.63	65.91
AT4G34110.1	Thale cress	cytosol	62.54	65.82
CDY51957	Canola	cytosol, plastid	61.48	65.75
CDX75397	Canola	nucleus, plastid	61.18	65.75
CDY67365	Canola	plastid	28.4	64.38
Bra015220.1-P	Field mustard	cytosol	56.19	64.36
CDY36634	Canola	nucleus	62.99	64.25
CDX79296	Canola	plastid	16.62	60.11
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	70.09	58.96
PGSC0003DMT400012508	Potato	nucleus	10.88	58.06
GSMUA_Achr7P05430_001	Banana	nucleus	71.15	52.1
Bra022413.1-P	Field mustard	cytosol	31.27	46.41
Os06t0589700-01	Rice	cytosol, extracellular	27.19	45.11
CDX92325	Canola	nucleus	20.24	41.61
Os03t0278500-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	36.86	37.71
CDX91689	Canola	nucleus	15.41	33.44
Os10t0457000-01	Rice	nucleus	15.56	29.01
Os02t0567900-01	Rice	cytosol, nucleus	10.57	27.03
Os04t0625800-01	Rice	nucleus	15.41	24.0
Os04t0449900-01	Rice	plastid	13.75	23.51
Os03t0569900-01	Rice	nucleus	14.05	23.13
Os08t0190200-00	Rice	nucleus	15.41	23.08
Os03t0174100-02	Rice	nucleus	14.05	22.36
Os07t0615400-01	Rice	nucleus	13.9	21.55
Os09t0462700-01	Rice	mitochondrion, nucleus, plastid	14.35	21.54
Os08t0520300-01	Rice	nucleus	13.75	20.36
Solyc06g062680.1.1	Tomato	cytosol	16.31	20.34
Os11t0620100-01	Rice	nucleus	13.29	19.95
Os07t0516900-01	Rice	plastid	7.25	19.12
Os04t0682400-01	Rice	nucleus	14.35	9.42

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	EntrezGene:4346409	EMBL:AK067816	ProteinID:BAD16229.1
ProteinID:BAF24497.1	ProteinID:BAT06849.1	ProteinID:BAT06850.1	ncoils:Coil	ProteinID:EAZ43770.1	EMBL:EU267994
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
EnsemblPlantsGene:Os09g0115400	EnsemblPlants:Os09t0115400-01	InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076
PFAM:PF00658	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF679	UniProt:Q6YYV1
InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517
SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI0000358CD1	RefSeq:XP_015611898.1	SEG:seg

Description

Polyadenylate-binding proteinSimilar to Poly(A)-binding protein. (Os09t0115400-01);Hypothetical conserved gene. (Os09t0115400-03);Hypothetical conserved gene. (Os09t0115400-04)

Coordinates

chr9:-:1212964..1218005

Molecular Weight (calculated)

71634.4 Da

IEP (calculated)

6.796

GRAVY (calculated)

-0.409

Length

662 amino acids

Sequence
(BLAST)

001: MAAAAAQAQA QQAASSASEG GSPASSAAAA AAAAASFPAT SLYVGDLDVS VQDAQLFDVF AQVGGVVSVR VCRDVNTRRS LGYAYVNYSS PADAARALEM
101: LNFTPINGKP IRIMYSNRDP SLRKSGTANI FIKNLDKSID NKALYDTFCV FGNILSCKVA TDASGESKGY GFVQYERDEA AQAAIDKLNG MLMNDKKVYV
201: GPFIRKQERD NSPGQVKFNN VYVKNLSENT TEDDLKEIFG KFGTITSAVV MREGDGRSKC FGFVNFESPD DAAQAVQELN GKKFDDKEWY VGRAQKKSER
301: EMELKEKFEK NLQEAADKYQ NTNLYLKNLD DSVDDDKLRE LFAEYGTITS CKVMRDSNGV SRGSGFVAFK SAEDASRALA EMNSKMVGSK PLYVALAQRK
401: EDRKARLQAQ FSQLRPVPLA PSVGPRMPMF PPGVPGVGQQ LFYGQPPPAF INTQPGFGFQ QPLMPGMRPG AGPMPNFIMP MVQQGQQPQR PAGRRAGAGG
501: MQQPMPMGQQ QMMARGGRGY RYPTGRGMPD PAMHGVGGGV MPSPYEMGGM PMRDAAASQP VPIGALATAL ANAAPDQQRM MLGENLYPLV DQLEHEQAAK
601: VTGMLLEMDQ TEVLHLLESP EALKAKVAEA MEVLRTAQQI QTNATPEQQL ASLSLNDGVV SS

Best Arabidopsis Sequence Match ( AT1G49760.1 )
(BLAST)

001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P

Arabidopsis Description

PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.