Factsheet for VIT_07s0031g00210.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g10170.t01	Wine grape	cytosol	83.03	84.84
VIT_18s0001g10220.t01	Wine grape	cytosol	12.23	80.0
VIT_18s0001g10210.t01	Wine grape	cytosol	7.65	79.37
GSMUA_Achr9P00990_001	Banana	cytosol	75.54	75.88
GSMUA_Achr4P09890_001	Banana	cytosol	74.77	75.0
GSMUA_AchrUn_...	Banana	cytosol	73.85	74.08
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	66.67	71.36
Os09t0115400-01	Rice	nucleus	72.02	71.15
GSMUA_Achr4P20270_001	Banana	cytosol	69.11	70.3
Os04t0504800-01	Rice	plasma membrane	69.72	69.2
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	69.72	69.09
TraesCS5B01G159400.1	Wheat	cytosol	68.65	68.97
TraesCS5D01G167000.1	Wheat	nucleus, unclear	68.5	68.82
TraesCS5A01G161800.2	Wheat	nucleus	68.5	68.82
Zm00001d025801_P005	Maize	cytosol, plastid	68.5	68.71
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	68.5	68.71
TraesCS2A01G359000.1	Wheat	cytosol	69.27	68.12
TraesCS2D01G358000.1	Wheat	cytosol	69.11	68.07
KXG35258	Sorghum	cytosol	68.2	67.99
TraesCS2B01G378400.1	Wheat	nucleus	69.11	67.97
EES12460	Sorghum	plastid	68.81	67.77
Zm00001d005276_P007	Maize	cytosol	67.43	67.43
TraesCS7D01G287900.1	Wheat	cytosol	65.75	67.4
Zm00001d019824_P004	Maize	cytosol	67.28	67.07
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	79.66	66.2
TraesCS7A01G288700.1	Wheat	nucleus	66.97	66.16
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	12.23	64.0
HORVU5Hr1G050560.1	Barley	plastid	68.35	63.68
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	66.82	61.03
TraesCS7B01G182800.3	Wheat	cytosol	61.93	60.0
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	59.33	59.88
VIT_18s0001g02490.t01	Wine grape	plastid	59.63	59.18
GSMUA_Achr7P05430_001	Banana	nucleus	71.71	51.88
VIT_09s0002g03160.t01	Wine grape	cytosol, nucleus, plastid, vacuole	31.65	43.49
VIT_08s0007g04380.t01	Wine grape	cytosol	41.74	43.06
VIT_04s0023g01470.t01	Wine grape	nucleus	17.89	31.37
VIT_04s0008g02930.t01	Wine grape	nucleus	14.83	24.43
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	15.6	24.29
VIT_06s0004g02040.t01	Wine grape	nucleus	16.51	24.27
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	15.29	23.7
VIT_03s0063g00850.t01	Wine grape	nucleus	14.83	23.43
VIT_18s0001g11080.t01	Wine grape	nucleus	14.83	23.21
VIT_19s0090g00280.t01	Wine grape	nucleus	16.36	23.11
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	4.28	19.18

Protein Annotations

Gene3D:1.10.1900.10	EntrezGene:100262903	wikigene:100262903	MapMan:17.4.2.5	Gene3D:3.30.70.330	ProteinID:CBI21386
ProteinID:CBI21386.3	UniProt:D7SVT7	EMBL:FN595233	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	InterPro:IPR000504
InterPro:IPR002004	InterPro:IPR012677	EntrezGene:LOC100262903	wikigene:LOC100262903	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom
InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102	PFscan:PS51309
PANTHER:PTHR24012	PANTHER:PTHR24012:SF349	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360
SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGR:TC60369	TIGR:TC65253
TIGR:TC65507	TIGRFAMs:TIGR01628	UniParc:UPI00015CA090	ArrayExpress:VIT_07s0031g00210	EnsemblPlantsGene:VIT_07s0031g00210	EnsemblPlants:VIT_07s0031g00210.t01
unigene:Vvi.17481	unigene:Vvi.7997	RefSeq:XP_002283105	RefSeq:XP_002283105.1	SEG:seg	:

Description

Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:D7SVT7]

Coordinates

chr7:+:16419548..16426162

Molecular Weight (calculated)

71366.1 Da

IEP (calculated)

8.232

GRAVY (calculated)

-0.433

Length

654 amino acids

Sequence
(BLAST)

001: MAQVQVQAQA QPPVSAANGG ASNGGGNQFV STSLYVGDLE SNVTDSHLYD LFGQLGPVVS VRVCRDLSTR RSLGYGYVNY GNTQDAARAL DMLNFTPLNG
101: KPIRIMYSFR DPSIRRSGTA NIFIKNLDKA IDNKALYDTF STFGAILSCK IATDASGQSK GYGFVQFDNE ESAKNATDKL NGMLLNDKQV YVGPFVRKQE
201: RESATNKTKF NNVYVKNLLE STTDEDLKNI FGEYGPITSA VVMQDGDGKS KCFGFVNFEN ADDAARSVEA LNGKKFDDKE WYVGKAQKKT EREVELKGRF
301: EQSLKEAVDK FQGLNLYVKN LDDSIADDKL RELFSEFGTI TSCKVMRDPN GISRGSGFVA FSTAEEASRA LADMNGKMVA SKPLYVALAQ RKEDRRARLQ
401: AQFSQMRPAA MAPSVGPRMS MYPPGAPGLG QQLFYGQGPP ALIPPQPGFG YQHQLVPGMR PGAAPMPNFF VPMVQPGQPN QRPGGRRSGT GPVQQTQQPL
501: PLMQQQMLPR GRVYRYPPGR NMADVPIPGV PGGMLSAPYD MAGMPFRDAA VSQPMPIGAL ATALANAPPD QQRTLLGENL YPLVDQLEHE MAAKVTGMLL
601: EMDQTEVLHL LESPEALKAK VAEAMEVLRN VAQQQANNPT DRMASLSLND TLTS

Best Arabidopsis Sequence Match ( AT4G34110.1 )
(BLAST)

001: MAQVQLQGQT PNGSTAAVTS APATSGGATA TQFGNTSLYV GDLDFNVTDS QLFDAFGQMG TVVTVRVCRD LVTRRSLGYG YVNFTNPQDA ARAIQELNYI
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS

Arabidopsis Description

PAB2Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A178UWB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.