Factsheet for VIT_11s0016g00700.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 4
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	83.89	84.29
PGSC0003DMT400066072	Potato	nucleus	79.86	82.2
Solyc07g042180.2.1	Tomato	nucleus	77.49	82.16
GSMUA_Achr6P11660_001	Banana	mitochondrion	81.28	81.09
KRH19347	Soybean	mitochondrion, nucleus	78.67	80.98
KRH02581	Soybean	mitochondrion	78.91	80.63
GSMUA_Achr10P...	Banana	mitochondrion	81.04	80.47
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	80.57	78.34
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	74.41	78.3
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	74.41	78.3
GSMUA_Achr11P...	Banana	nucleus	76.54	72.75
Os07t0615400-01	Rice	nucleus	72.75	71.9
Os11t0620100-01	Rice	nucleus	72.27	69.16
TraesCS2D01G176700.1	Wheat	nucleus	69.67	69.01
Zm00001d026528_P001	Maize	plastid	35.78	68.64
TraesCS2A01G169100.1	Wheat	nucleus	69.43	68.46
TraesCS2B01G195400.1	Wheat	nucleus	69.43	68.3
TraesCS4B01G148600.1	Wheat	nucleus	71.8	68.09
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	79.38	67.54
VIT_04s0008g02930.t01	Wine grape	nucleus	63.27	67.25
Zm00001d048824_P004	Maize	nucleus	71.09	67.11
EES08860	Sorghum	nucleus	69.67	66.67
TraesCS4D01G150600.2	Wheat	nucleus	70.85	66.59
TraesCS4A01G150000.1	Wheat	mitochondrion	70.14	66.07
HORVU4Hr1G033990.7	Barley	golgi, nucleus	67.54	64.92
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	22.27	64.38
HORVU2Hr1G031260.2	Barley	nucleus, plastid	69.91	59.36
Zm00001d026522_P001	Maize	nucleus	30.81	53.28
VIT_03s0063g00850.t01	Wine grape	nucleus	26.07	26.57
VIT_18s0001g11080.t01	Wine grape	nucleus	26.3	26.55
VIT_19s0090g00280.t01	Wine grape	nucleus	28.91	26.35
VIT_06s0004g02040.t01	Wine grape	nucleus	25.83	24.49
VIT_04s0023g01470.t01	Wine grape	nucleus	18.72	21.18
VIT_09s0002g03160.t01	Wine grape	cytosol, nucleus, plastid, vacuole	20.85	18.49
VIT_07s0031g00210.t01	Wine grape	cytosol	23.7	15.29
VIT_18s0001g10170.t01	Wine grape	cytosol	22.99	15.16
VIT_08s0007g04380.t01	Wine grape	cytosol	22.27	14.83
VIT_18s0001g02490.t01	Wine grape	plastid	20.14	12.9
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	23.93	12.83
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	2.84	9.6
VIT_18s0001g10220.t01	Wine grape	cytosol	1.18	5.0
VIT_18s0001g10210.t01	Wine grape	cytosol	0.24	1.59

Protein Annotations

EntrezGene:100259344	wikigene:100259344	MapMan:16.9.3	Gene3D:3.30.70.330	ProteinID:CCB51380	ProteinID:CCB51380.1
UniProt:F6HGN2	EMBL:FN595756	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100259344	wikigene:LOC100259344	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR44160	PANTHER:PTHR44160:SF4	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk
SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928	TIGR:TC60380	UniParc:UPI0002107F55	ArrayExpress:VIT_11s0016g00700
EnsemblPlantsGene:VIT_11s0016g00700	EnsemblPlants:VIT_11s0016g00700.t01	RefSeq:XP_002276983	RefSeq:XP_002276983.1	RefSeq:XP_002277008	RefSeq:XP_002277008.1
RefSeq:XP_010656097.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:-:669088..676453

Molecular Weight (calculated)

45905.0 Da

IEP (calculated)

7.847

GRAVY (calculated)

-0.460

Length

422 amino acids

Sequence
(BLAST)

001: MQQQRLKQQQ QALIQQSLLQ QQSLYHHPGL LAPPQIEPIL SGNLPPGFDS STCRSVYVGN IHPQVTEPLL QEVFSSTGPL EGCKLIRKEK SSYGFVDYFD
101: RRSAALSIVT LNGRHLFGQP IKVNWAYASS QREDTSGHYN IFVGDLSPEV TDATLFACFS VYPSCSDARV MWDQKTGRSR GFGFVSFRNQ QEAQSAINDL
201: NGRWLGSRQI RCNWATKGAG GNEDKPNSDA KSVVELTNGT SEDGKDKSND EAPENNLQYT TVYVGNLAPE VTSVDLHRHF HALGAGAIED VRVQRDKGFG
301: FVRYSTHAEA ALAIQMGNAR ILCGKPIKCS WGSKPTPAGT SSTPLPPPAA PHMPGISAAD FAAYERQMAL SKMGGAQGLM HPQAQHALKQ TAMGMGAGGS
401: SQAIYDGGFQ NAATTQQLMY YQ

Best Arabidopsis Sequence Match ( AT1G17370.1 )
(BLAST)

001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ

Arabidopsis Description

UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.