Factsheet for HORVU2Hr1G031260.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G005480.2
HORVU2Hr1G104270.1
HORVU2Hr1G104300.1
HORVU4Hr1G002540.1
HORVU6Hr1G075650.1
HORVU7Hr1G038130.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14100.1	HORVU0Hr1G005480.2	AT1G16500.1	21798944
AT3G14100.1	HORVU2Hr1G104270.1	AT1G16500.1	21798944
AT3G14100.1	HORVU2Hr1G104300.1	AT1G16500.1	21798944
AT3G14100.1	HORVU4Hr1G002540.1	AT1G16500.1	21798944
AT3G14100.1	HORVU6Hr1G075650.1	AT3G47620.1	21798944
AT3G14100.1	HORVU7Hr1G038130.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G195400.1	Wheat	nucleus	84.71	98.14
TraesCS2D01G176700.1	Wheat	nucleus	83.9	97.89
TraesCS2A01G169100.1	Wheat	nucleus	84.1	97.66
Os07t0615400-01	Rice	nucleus	71.83	83.61
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	58.75	70.02
GSMUA_Achr6P11660_001	Banana	mitochondrion	59.56	69.98
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	59.36	69.91
Solyc06g063000.2.1	Tomato	nucleus	58.55	69.78
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	58.75	69.52
GSMUA_Achr10P...	Banana	mitochondrion	59.36	69.41
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	59.96	68.66
KRH47641	Soybean	nucleus	58.15	68.48
KRH06218	Soybean	nucleus	56.94	68.03
PGSC0003DMT400058919	Potato	nucleus	55.53	66.19
Solyc03g122180.2.1	Tomato	nucleus	55.53	66.19
AT1G17370.1	Thale cress	mitochondrion, nucleus	55.33	65.63
KRH19347	Soybean	mitochondrion, nucleus	53.92	65.37
GSMUA_Achr11P...	Banana	nucleus	58.35	65.32
CDY63384	Canola	mitochondrion, nucleus	54.93	65.31
AT3G14100.1	Thale cress	nucleus	55.94	65.11
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	52.52	65.09
Bra030985.1-P	Field mustard	mitochondrion, nucleus	54.73	65.07
KRH02581	Soybean	mitochondrion	53.92	64.89
Bra030908.1-P	Field mustard	nucleus	54.53	64.68
CDY02486	Canola	nucleus	54.53	64.52
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	51.91	64.34
CDY61476	Canola	nucleus	54.12	64.2
PGSC0003DMT400066072	Potato	nucleus	52.72	63.9
Bra037962.1-P	Field mustard	nucleus	54.12	63.9
Solyc07g042180.2.1	Tomato	nucleus	51.11	63.82
CDY51403	Canola	nucleus	53.92	63.81
HORVU4Hr1G033990.7	Barley	golgi, nucleus	55.94	63.33
CDY33092	Canola	nucleus	54.12	63.29
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	61.97	62.1
AT1G54080.2	Thale cress	nucleus	53.32	61.63
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	16.1	54.79
HORVU7Hr1G052090.3	Barley	nucleus	51.11	51.42
CDX81822	Canola	mitochondrion, nucleus	54.93	50.09
HORVU6Hr1G048390.1	Barley	cytoskeleton, nucleus, peroxisome	21.33	25.42
HORVU5Hr1G069180.3	Barley	nucleus, peroxisome, plastid	21.53	24.71
HORVU2Hr1G078910.4	Barley	mitochondrion, nucleus	20.52	23.89
HORVU4Hr1G075700.5	Barley	nucleus	19.11	22.84
HORVU1Hr1G038240.1	Barley	nucleus	15.69	21.2
HORVU2Hr1G106810.1	Barley	nucleus	19.32	20.78
HORVU7Hr1G066510.3	Barley	plastid	17.91	20.37
HORVU2Hr1G064650.4	Barley	nucleus	13.08	19.06
HORVU2Hr1G046380.2	Barley	nucleus	14.29	16.1
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	17.5	14.24
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	20.12	13.97
HORVU5Hr1G050560.1	Barley	plastid	19.11	13.53
HORVU4Hr1G059070.1	Barley	cytosol	17.5	13.3
HORVU2Hr1G123110.1	Barley	nucleus, plastid	23.14	10.82
HORVU2Hr1G122920.2	Barley	nucleus	21.53	10.57

Protein Annotations

MapMan:16.9.3	Gene3D:3.30.70.330	UniProt:A0A287HKS9	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	EnsemblPlantsGene:HORVU2Hr1G031260	EnsemblPlants:HORVU2Hr1G031260.2	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44160	PANTHER:PTHR44160:SF4	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928	UniParc:UPI000B46E355	SEG:seg

Description

No Description!

Coordinates

chrchr2H:+:118545809..118552399

Molecular Weight (calculated)

54267.2 Da

IEP (calculated)

9.740

GRAVY (calculated)

-0.499

Length

497 amino acids

Sequence
(BLAST)

001: QNRKLASEIP GPRIQGQTRP KTRGKTNRLY PFPSFIPLSL SLPPRPSRPF HPLPHPTNLP STGQRGRAML PQQNQAQAAA MMQQAAALQS MYAMPPPPHH
101: HLLGAAPPQQ IEPILTGNLP PGFDTSTCRS VYVGNIHVQV TEALLREVFQ SAGSVDGCKL IRKEKSSYGF VDYYERGSAA LAILTLNGKQ IFGQPIRVNW
201: AYASGQREDT TDHFHIFVGD LSPEVTDSAL FAFFSAYSPN CSDARVMWDQ KTGRSRGYGF VSFRNQQDAQ SAINDLNGQW LGNRQIRCNW ATKGANSGED
301: QLASDSKSIV DVNNNFTENA KQKSNEDAPE NNPLYRTVYV GNLAHEVTQD VLHRFFHALG AGAIEEVRVQ HGKGFGFVKY SNHAETALAI QTGNGRILGG
401: KPVKCSWGNK PTPPGTTSAP LPPPAAPSHP AAANLVAYQR AIAMSKMAST QALMQAQHLR QAAMGMGVGA SQAMYDGTFQ NVGASQQQQQ QQQLMYY

Best Arabidopsis Sequence Match ( AT1G17370.1 )
(BLAST)

001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ

Arabidopsis Description

UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.