Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- mitochondrion 4
- nucleus 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030985.1-P | Field mustard | mitochondrion, nucleus | 93.56 | 93.78 |
| CDY63384 | Canola | mitochondrion, nucleus | 93.56 | 93.78 |
| KRH06218 | Soybean | nucleus | 83.77 | 84.38 |
| VIT_09s0002g00880.t01 | Wine grape | mitochondrion, nucleus | 84.25 | 84.05 |
| KRH47641 | Soybean | nucleus | 83.53 | 82.94 |
| AT3G14100.1 | Thale cress | nucleus | 82.58 | 81.03 |
| GSMUA_Achr6P11660_001 | Banana | mitochondrion | 76.61 | 75.89 |
| AT1G54080.2 | Thale cress | nucleus | 76.85 | 74.88 |
| GSMUA_Achr10P... | Banana | mitochondrion | 75.42 | 74.35 |
| GSMUA_Achr3P02150_001 | Banana | mitochondrion, nucleus | 75.89 | 73.27 |
| CDX81822 | Canola | mitochondrion, nucleus | 93.08 | 71.56 |
| Os11t0620100-01 | Rice | nucleus | 73.75 | 70.07 |
| TraesCS4B01G148600.1 | Wheat | nucleus | 73.75 | 69.44 |
| GSMUA_Achr11P... | Banana | nucleus | 73.51 | 69.37 |
| TraesCS4D01G150600.2 | Wheat | nucleus | 73.03 | 68.15 |
| TraesCS4A01G150000.1 | Wheat | mitochondrion | 72.55 | 67.86 |
| Zm00001d026528_P001 | Maize | plastid | 35.56 | 67.73 |
| Zm00001d048824_P004 | Maize | nucleus | 71.84 | 67.34 |
| EES08860 | Sorghum | nucleus | 69.93 | 66.44 |
| Os07t0615400-01 | Rice | nucleus | 67.54 | 66.28 |
| HORVU4Hr1G033990.7 | Barley | golgi, nucleus | 68.97 | 65.83 |
| TraesCS2D01G176700.1 | Wheat | nucleus | 65.87 | 64.79 |
| TraesCS2A01G169100.1 | Wheat | nucleus | 65.63 | 64.25 |
| TraesCS2B01G195400.1 | Wheat | nucleus | 65.63 | 64.1 |
| GSMUA_Achr2P21780_001 | Banana | nucleus, plastid | 75.42 | 63.71 |
| HORVU2Hr1G031260.2 | Barley | nucleus, plastid | 65.63 | 55.33 |
| Zm00001d026522_P001 | Maize | nucleus | 31.74 | 54.51 |
| AT4G27000.1 | Thale cress | nucleus | 26.49 | 26.75 |
| AT5G54900.1 | Thale cress | nucleus | 23.87 | 25.84 |
| AT1G11650.2 | Thale cress | nucleus | 24.82 | 25.68 |
| AT3G19130.1 | Thale cress | nucleus | 26.25 | 25.29 |
| AT1G49600.3 | Thale cress | nucleus | 26.49 | 24.67 |
| AT1G47490.1 | Thale cress | nucleus | 23.63 | 22.92 |
| AT1G47500.1 | Thale cress | nucleus | 23.39 | 22.58 |
| AT5G19350.1 | Thale cress | cytosol | 21.48 | 21.18 |
| AT2G18510.1 | Thale cress | nucleus | 16.47 | 19.01 |
| AT4G34110.1 | Thale cress | cytosol | 23.15 | 15.42 |
| AT1G49760.1 | Thale cress | cytosol | 24.34 | 15.2 |
| AT2G23350.1 | Thale cress | nucleus | 23.39 | 14.8 |
| AT1G34140.1 | Thale cress | nucleus | 14.08 | 14.5 |
| AT2G36660.1 | Thale cress | cytosol, plastid | 20.53 | 14.12 |
| AT3G16380.1 | Thale cress | nucleus | 17.9 | 13.97 |
| AT1G22760.1 | Thale cress | nucleus, plastid | 21.48 | 13.64 |
| AT1G71770.1 | Thale cress | cytosol, plastid | 21.0 | 12.9 |
Protein Annotations
| MapMan:16.9.3 | Gene3D:3.30.70.330 | EntrezGene:838309 | ProteinID:AAF79492.1 | ProteinID:AAF97318.1 | ProteinID:AEE29579.1 |
| ArrayExpress:AT1G17370 | EnsemblPlantsGene:AT1G17370 | RefSeq:AT1G17370 | TAIR:AT1G17370 | RefSeq:AT1G17370-TAIR-G | EnsemblPlants:AT1G17370.1 |
| TAIR:AT1G17370.1 | EMBL:AY085705 | Unigene:At.43816 | EMBL:BT026477 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_564018.1 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR44160 | PANTHER:PTHR44160:SF1 | UniProt:Q9LQI9 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | Symbol:UBP1B | UniParc:UPI00000A206D |
| SEG:seg | : | : | : | : | : |
Description
UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
Coordinates
chr1:-:5951542..5955143
Molecular Weight (calculated)
46051.4 Da
IEP (calculated)
7.639
GRAVY (calculated)
-0.476
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.