Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89287 | Canola | nucleus | 85.54 | 85.75 |
| Bra019078.1-P | Field mustard | nucleus | 84.58 | 85.19 |
| CDY14290 | Canola | nucleus | 84.58 | 84.17 |
| CDY29263 | Canola | nucleus | 84.34 | 83.53 |
| Bra010418.1-P | Field mustard | nucleus | 75.9 | 83.33 |
| CDY66423 | Canola | nucleus | 84.1 | 81.92 |
| CDY46671 | Canola | nucleus | 84.58 | 81.82 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 83.86 | 81.69 |
| Bra026387.1-P | Field mustard | nucleus | 75.66 | 79.9 |
| AT5G54900.1 | Thale cress | nucleus | 71.08 | 76.23 |
| PGSC0003DMT400057203 | Potato | cytosol | 64.58 | 66.5 |
| Solyc07g064510.2.1 | Tomato | plastid | 64.82 | 65.61 |
| AT1G11650.2 | Thale cress | nucleus | 58.31 | 59.75 |
| VIT_19s0090g00280.t01 | Wine grape | nucleus | 66.51 | 59.61 |
| AT1G47500.1 | Thale cress | nucleus | 46.99 | 44.93 |
| AT5G19350.1 | Thale cress | cytosol | 45.54 | 44.47 |
| Zm00001d021149_P001 | Maize | cytosol | 17.59 | 44.24 |
| AT1G47490.1 | Thale cress | nucleus | 45.54 | 43.75 |
| AT3G19130.1 | Thale cress | nucleus | 45.78 | 43.68 |
| AT1G49600.3 | Thale cress | nucleus | 44.34 | 40.89 |
| AT1G17370.1 | Thale cress | mitochondrion, nucleus | 26.75 | 26.49 |
| AT3G14100.1 | Thale cress | nucleus | 26.99 | 26.23 |
| AT1G54080.2 | Thale cress | nucleus | 26.99 | 26.05 |
| AT2G18510.1 | Thale cress | nucleus | 14.94 | 17.08 |
| AT4G34110.1 | Thale cress | cytosol | 25.06 | 16.53 |
| AT1G34140.1 | Thale cress | nucleus | 15.42 | 15.72 |
| AT1G22760.1 | Thale cress | nucleus, plastid | 23.37 | 14.7 |
| AT2G23350.1 | Thale cress | nucleus | 23.13 | 14.5 |
| AT1G49760.1 | Thale cress | cytosol | 23.13 | 14.31 |
| AT2G36660.1 | Thale cress | cytosol, plastid | 20.96 | 14.29 |
| AT3G16380.1 | Thale cress | nucleus | 17.83 | 13.78 |
| AT1G71770.1 | Thale cress | cytosol, plastid | 21.45 | 13.05 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | EntrezGene:828808 | UniProt:A0A178UW18 | ProteinID:AEE85282.1 | EMBL:AF370339 |
| ArrayExpress:AT4G27000 | EnsemblPlantsGene:AT4G27000 | RefSeq:AT4G27000 | TAIR:AT4G27000 | RefSeq:AT4G27000-TAIR-G | EnsemblPlants:AT4G27000.1 |
| TAIR:AT4G27000.1 | Symbol:ATRBP45C | EMBL:AY054487 | EMBL:AY062999 | EMBL:AY093292 | Unigene:At.47594 |
| ProteinID:CAB36546.1 | ProteinID:CAB79555.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008143 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_567764.1 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OAO97344.1 |
| PFAM:PF00076 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR43955 |
| PANTHER:PTHR43955:SF8 | UniProt:Q93W34 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI00000A9BF5 | SEG:seg | : | : | : | : |
Description
RBP45CPolyadenylate-binding protein RBP45C [Source:UniProtKB/Swiss-Prot;Acc:Q93W34]
Coordinates
chr4:-:13554604..13557915
Molecular Weight (calculated)
44974.8 Da
IEP (calculated)
5.700
GRAVY (calculated)
-0.836
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: MMQQPPPASN GAATGPGQIP SDQQAYLQQQ QSWMMQHQQQ QQGQPPAGWN QQSAPSSGQP QQQQYGGGGS QNPGSAGEIR SLWIGDLQPW MDENYLMNVF
101: GLTGEATAAK VIRNKQNGYS EGYGFIEFVN HATAERNLQT YNGAPMPSSE QAFRLNWAQL GAGERRQAEG PEHTVFVGDL APDVTDHMLT ETFKAVYSSV
201: KGAKVVNDRT TGRSKGYGFV RFADESEQIR AMTEMNGQYC SSRPMRTGPA ANKKPLTMQP ASYQNTQGNS GESDPTNTTI FVGAVDQSVT EDDLKSVFGQ
301: FGELVHVKIP AGKRCGFVQY ANRACAEQAL SVLNGTQLGG QSIRLSWGRS PSNKQTQPDQ AQYGGGGGYY GYPPQGYEAY GYAPPPQDPN AYYGGYAGGG
401: YGNYQQPGGY QQQQQ
101: GLTGEATAAK VIRNKQNGYS EGYGFIEFVN HATAERNLQT YNGAPMPSSE QAFRLNWAQL GAGERRQAEG PEHTVFVGDL APDVTDHMLT ETFKAVYSSV
201: KGAKVVNDRT TGRSKGYGFV RFADESEQIR AMTEMNGQYC SSRPMRTGPA ANKKPLTMQP ASYQNTQGNS GESDPTNTTI FVGAVDQSVT EDDLKSVFGQ
301: FGELVHVKIP AGKRCGFVQY ANRACAEQAL SVLNGTQLGG QSIRLSWGRS PSNKQTQPDQ AQYGGGGGYY GYPPQGYEAY GYAPPPQDPN AYYGGYAGGG
401: YGNYQQPGGY QQQQQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.