Factsheet for Bra026387.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra008613.1-P
Bra023570.1-P
Bra028662.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27000.1	Bra028662.1-P	AT5G08330.1	21798944
AT4G27000.1	Bra008613.1-P	AT5G16560.1	21798944
AT4G27000.1	Bra023570.1-P	AT5G16560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89287	Canola	nucleus	87.28	82.85
CDY29263	Canola	nucleus	86.51	81.15
Bra010418.1-P	Field mustard	nucleus	77.1	80.16
Bra019078.1-P	Field mustard	nucleus	81.68	77.91
AT4G27000.1	Thale cress	nucleus	79.9	75.66
Bra002947.1-P	Field mustard	nucleus	64.89	64.39
PGSC0003DMT400057203	Potato	cytosol	59.29	57.82
Solyc07g064510.2.1	Tomato	plastid	60.31	57.8
VIT_19s0090g00280.t01	Wine grape	nucleus	61.07	51.84
Bra031774.1-P	Field mustard	nucleus	51.91	51.78
Bra027446.1-P	Field mustard	cytosol	37.4	45.94
Zm00001d021149_P001	Maize	cytosol	18.07	43.03
Bra040663.1-P	Field mustard	nucleus	40.71	43.01
Bra018813.1-P	Field mustard	mitochondrion, nucleus	42.49	42.82
Bra002230.1-P	Field mustard	nucleus	44.78	42.0
Bra006502.1-P	Field mustard	nucleus	44.53	40.7
Bra001735.1-P	Field mustard	nucleus	41.98	40.05
Bra037538.1-P	Field mustard	nucleus	40.46	39.45
Bra022389.1-P	Field mustard	nucleus	42.75	39.44
Bra014216.1-P	Field mustard	nucleus	40.97	28.15
Bra030985.1-P	Field mustard	mitochondrion, nucleus	24.94	23.45
Bra030908.1-P	Field mustard	nucleus	24.94	23.39
Bra037962.1-P	Field mustard	nucleus	24.94	23.28
Bra034301.1-P	Field mustard	mitochondrion	6.36	22.52
Bra039603.1-P	Field mustard	nucleus	15.01	16.21
Bra037217.1-P	Field mustard	nucleus	15.52	16.01
Bra016371.1-P	Field mustard	plastid	21.12	13.95
Bra011488.1-P	Field mustard	cytosol, plastid	21.37	13.7
Bra032172.1-P	Field mustard	cytosol	22.39	13.66
Bra013104.1-P	Field mustard	cytosol	21.37	13.64
Bra034603.1-P	Field mustard	cytosol, plastid	21.12	13.41
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	20.87	13.1
Bra018797.1-P	Field mustard	cytosol	21.12	12.71
Bra015220.1-P	Field mustard	cytosol	18.32	12.46
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	16.54	12.45
Bra007984.1-P	Field mustard	plastid	19.34	12.18
Bra003915.1-P	Field mustard	cytosol	19.34	11.73
Bra016118.1-P	Field mustard	plastid	20.36	11.7
Bra039841.1-P	Field mustard	cytosol	5.34	9.86
Bra022413.1-P	Field mustard	cytosol	10.43	9.19

Protein Annotations

EnsemblPlants:Bra026387.1	EnsemblPlants:Bra026387.1-P	EnsemblPlantsGene:Bra026387	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR43955	PANTHER:PTHR43955:SF8	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000254575B	UniProt:M4EC78	MapMan:16.9.4	:

Description

AT4G27000 (E=4e-091) ATRBP45C | ATRBP45C; RNA binding

Coordinates

chrA01:-:9611732..9614331

Molecular Weight (calculated)

43193.6 Da

IEP (calculated)

8.253

GRAVY (calculated)

-0.754

Length

393 amino acids

Sequence
(BLAST)

001: MMQHSPPAAN GAAAGSGQDQ QAYHHQQWMM MQQQQQQQGQ PPAGWNPQSS PSLGQQQQYG GGSQNPGSGG EIRSLWIGDL QPWMDENHLK NIFSTLTGEV
101: QQAKVIRNKQ SGYSEGYGFI EFVSHAAAER ILQTYNGAQM PGCEQTFRLN WAQLGAGERR QADGPEHTVF VGDLAPDVTD YMLTETFKAV YSSVKGAKVV
201: TDRTTGRSKG YGFVKFGDES EQIRAMTEMN GQYCSSRPMR TGPAANKKPL TMQQPVILVS KLITVVTSVR PWKELSSLVC YLQVHIRALK EIPEKLIQLT
301: QRACAEQALN QLNGTQLGGQ SIRLSWGRSP NNKQTQPDQA QYGGGGGYYG YPPQGYEGYG YAPPPQDPNA YYGGYPGAGY GNYQQQQPGG YQQ

Best Arabidopsis Sequence Match ( AT4G27000.1 )
(BLAST)

001: MMQQPPPASN GAATGPGQIP SDQQAYLQQQ QSWMMQHQQQ QQGQPPAGWN QQSAPSSGQP QQQQYGGGGS QNPGSAGEIR SLWIGDLQPW MDENYLMNVF
101: GLTGEATAAK VIRNKQNGYS EGYGFIEFVN HATAERNLQT YNGAPMPSSE QAFRLNWAQL GAGERRQAEG PEHTVFVGDL APDVTDHMLT ETFKAVYSSV
201: KGAKVVNDRT TGRSKGYGFV RFADESEQIR AMTEMNGQYC SSRPMRTGPA ANKKPLTMQP ASYQNTQGNS GESDPTNTTI FVGAVDQSVT EDDLKSVFGQ
301: FGELVHVKIP AGKRCGFVQY ANRACAEQAL SVLNGTQLGG QSIRLSWGRS PSNKQTQPDQ AQYGGGGGYY GYPPQGYEAY GYAPPPQDPN AYYGGYAGGG
401: YGNYQQPGGY QQQQQ

Arabidopsis Description

RBP45CPolyadenylate-binding protein RBP45C [Source:UniProtKB/Swiss-Prot;Acc:Q93W34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.