Factsheet for Bra013104.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89664	Canola	cytosol	95.94	96.25
CDY67364	Canola	nucleus	45.29	95.22
CDY67365	Canola	plastid	44.81	94.52
Bra015220.1-P	Field mustard	cytosol	76.62	81.66
Bra011488.1-P	Field mustard	cytosol, plastid	80.03	80.42
Bra034603.1-P	Field mustard	cytosol, plastid	78.9	78.51
Bra039841.1-P	Field mustard	cytosol	24.84	71.83
Bra018797.1-P	Field mustard	cytosol	74.84	70.6
CDX79296	Canola	plastid	20.94	70.49
KRH50336	Soybean	cytosol	74.19	70.2
KRH70673	Soybean	nucleus	73.7	70.06
PGSC0003DMT400066245	Potato	extracellular	72.24	69.21
Solyc01g107870.2.1	Tomato	extracellular	72.08	69.05
TraesCS5B01G159400.1	Wheat	cytosol	67.53	63.9
TraesCS5D01G167000.1	Wheat	nucleus, unclear	67.37	63.75
Os09t0115400-01	Rice	nucleus	68.34	63.6
TraesCS5A01G161800.2	Wheat	nucleus	67.21	63.59
TraesCS7D01G287900.1	Wheat	cytosol	65.75	63.48
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	67.37	62.88
GSMUA_Achr9P00990_001	Banana	cytosol	66.23	62.67
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	61.85	62.36
GSMUA_Achr4P09890_001	Banana	cytosol	65.91	62.27
KXG35258	Sorghum	cytosol	66.07	62.04
TraesCS7A01G288700.1	Wheat	nucleus	66.23	61.63
Zm00001d005276_P007	Maize	cytosol	65.26	61.47
Zm00001d019824_P004	Maize	cytosol	65.1	61.13
GSMUA_Achr4P20270_001	Banana	cytosol	63.64	60.96
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	64.45	60.89
Os04t0504800-01	Rice	plasma membrane	64.94	60.7
GSMUA_AchrUn_...	Banana	cytosol	63.96	60.43
TraesCS2D01G358000.1	Wheat	cytosol	64.94	60.24
TraesCS2A01G359000.1	Wheat	cytosol	64.94	60.15
TraesCS2B01G378400.1	Wheat	nucleus	64.77	60.0
EES12460	Sorghum	plastid	64.61	59.94
Zm00001d025801_P005	Maize	cytosol, plastid	63.15	59.66
HORVU5Hr1G050560.1	Barley	plastid	67.53	59.26
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	59.9	58.95
Bra032172.1-P	Field mustard	cytosol	61.2	58.54
TraesCS7B01G182800.3	Wheat	cytosol	62.5	57.04
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	65.91	56.7
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	71.43	55.91
Bra016371.1-P	Field mustard	plastid	50.0	51.76
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	53.41	50.77
Bra003915.1-P	Field mustard	cytosol	50.16	47.69
Bra007984.1-P	Field mustard	plastid	47.89	47.28
Bra016118.1-P	Field mustard	plastid	51.95	46.78
Bra022413.1-P	Field mustard	cytosol	33.77	46.64
GSMUA_Achr7P05430_001	Banana	nucleus	67.05	45.69
Bra034301.1-P	Field mustard	mitochondrion	7.63	42.34
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	28.9	34.1
Bra039603.1-P	Field mustard	nucleus	16.07	27.2
Bra027446.1-P	Field mustard	cytosol	14.12	27.19
Bra037217.1-P	Field mustard	nucleus	16.56	26.77
Bra002230.1-P	Field mustard	nucleus	17.37	25.54
Bra006502.1-P	Field mustard	nucleus	17.21	24.65
Bra002947.1-P	Field mustard	nucleus	15.75	24.49
Bra019078.1-P	Field mustard	nucleus	16.23	24.27
Bra031774.1-P	Field mustard	nucleus	15.26	23.86
Bra018813.1-P	Field mustard	mitochondrion, nucleus	15.1	23.85
Bra010418.1-P	Field mustard	nucleus	14.12	23.02
Bra037962.1-P	Field mustard	nucleus	15.26	22.33
Bra030908.1-P	Field mustard	nucleus	15.1	22.2
Bra001735.1-P	Field mustard	nucleus	14.77	22.09
Bra022389.1-P	Field mustard	nucleus	15.26	22.07
Bra030985.1-P	Field mustard	mitochondrion, nucleus	14.77	21.77
Bra026387.1-P	Field mustard	nucleus	13.64	21.37
Bra037538.1-P	Field mustard	nucleus	12.99	19.85
Bra040663.1-P	Field mustard	nucleus	11.85	19.62
Bra014216.1-P	Field mustard	nucleus	12.99	13.99

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra013104	EnsemblPlants:Bra013104.1	EnsemblPlants:Bra013104.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	InterPro:Hud_Sxl_RNA	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677
UniProt:M4D9E4	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076
PFAM:PF00658	PRINTS:PR00961	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF349
InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517
SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI0002540A65	SEG:seg	:

Description

AT4G34110 (E=3e-255) PAB2, PABP2, ATPAB2 | PAB2 (POLY(A) BINDING 2); RNA binding / translation initiation factor

Coordinates

chrA03:+:20453686..20456789

Molecular Weight (calculated)

67268.9 Da

IEP (calculated)

7.301

GRAVY (calculated)

-0.508

Length

616 amino acids

Sequence
(BLAST)

001: MAQSQTQNGS VPPVGSVAAG AQFGTTSLYV GDLDASVTDS QLFDAFSQMG QVVSVRVCRD LATRRSLGYG YVNFTTPQDA ARAIQELNYI PINGKPVRVM
101: HSHRDPSVRR SGAGNIFIKN LDKSIDHKAL HDTFSAFGNI ISCKVALDSS GQSKGYGFVQ YETEESAQRA TSELNGMLLN DKQVYVGPFL RRQERDSNTA
201: ANVTKFTNVY VKNLAESTTE DDLKSAFGEF GEITSAVVMR DGDGKSKGFG FVNFEDAEDA AKAVEGLNGK TFGGDKEWYV GRAQKKSERE SELKVRYEES
301: LREAADKFQS CNLYVKNLDE SVSEEKLKEM FAPYGTVTSS KVMRDTNGIS RGAGFVAFST PEEATKAMSE MSGKMIENKP LYVAVAQRKE DRRARLQAQF
401: SQMRPMAMPP AVGPRMQMYP PGGPGMGQQM FYGQGPPTMI PQQPGFGYQQ QLVPGMRPGG APMHNFFMPM VQQGQQRPGG RRPAGIQQHQ MQPRGRMFRY
501: PQGRGSGGPP PDVPGRLPYE MPQHVPIGAL ATSLANASPE HQRTMLGENL YPLVEQLEAE SAAKVTGMLL EMDQTEVLHL LESPEALKAK VAEAMDVLRS
601: VAAGGAAEQL SSLNLN

Best Arabidopsis Sequence Match ( AT4G34110.1 )
(BLAST)

001: MAQVQLQGQT PNGSTAAVTS APATSGGATA TQFGNTSLYV GDLDFNVTDS QLFDAFGQMG TVVTVRVCRD LVTRRSLGYG YVNFTNPQDA ARAIQELNYI
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS

Arabidopsis Description

PAB2Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A178UWB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.