Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 2
- nucleus 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67364 | Canola | nucleus | 71.04 | 44.37 |
| CDY37229 | Canola | cytosol | 33.33 | 28.64 |
| CDX75397 | Canola | nucleus, plastid | 91.8 | 27.27 |
| CDX69025 | Canola | nucleus, plastid | 86.34 | 25.86 |
| CDY62723 | Canola | cytosol | 84.15 | 24.96 |
| CDY51957 | Canola | cytosol, plastid | 83.61 | 24.72 |
| CDX89664 | Canola | cytosol | 70.49 | 21.01 |
| CDX71223 | Canola | cytosol | 73.22 | 21.0 |
| Bra013104.1-P | Field mustard | cytosol | 70.49 | 20.94 |
| CDY36634 | Canola | nucleus | 71.04 | 20.03 |
| KRH70673 | Soybean | nucleus | 68.85 | 19.44 |
| KRH50336 | Soybean | cytosol | 68.85 | 19.35 |
| PGSC0003DMT400066245 | Potato | extracellular | 67.21 | 19.13 |
| Solyc01g107870.2.1 | Tomato | extracellular | 67.21 | 19.13 |
| CDY54068 | Canola | cytosol | 67.21 | 18.84 |
| CDY51045 | Canola | cytosol | 66.12 | 18.53 |
| HORVU2Hr1G087390.3 | Barley | cytosol, mitochondrion, nucleus | 60.11 | 18.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 63.93 | 17.94 |
| GSMUA_Achr4P09890_001 | Banana | cytosol | 63.39 | 17.79 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 61.75 | 17.33 |
| GSMUA_Achr9P00990_001 | Banana | cytosol | 61.2 | 17.2 |
| TraesCS7D01G287900.1 | Wheat | cytosol | 59.56 | 17.08 |
| CDY38939 | Canola | nucleus | 59.56 | 16.93 |
| EES12460 | Sorghum | plastid | 61.2 | 16.87 |
| TraesCS2D01G358000.1 | Wheat | cytosol | 61.2 | 16.87 |
| Os04t0504800-01 | Rice | plasma membrane | 60.66 | 16.84 |
| TraesCS2A01G359000.1 | Wheat | cytosol | 61.2 | 16.84 |
| Os08t0314800-02 | Rice | cytosol, nucleus, plasma membrane | 60.66 | 16.82 |
| CDX89562 | Canola | nucleus | 59.02 | 16.74 |
| TraesCS2B01G378400.1 | Wheat | nucleus | 60.66 | 16.69 |
| Zm00001d005276_P007 | Maize | cytosol | 59.56 | 16.67 |
| Os09t0115400-01 | Rice | nucleus | 60.11 | 16.62 |
| TraesCS5A01G161800.2 | Wheat | nucleus | 59.02 | 16.59 |
| TraesCS5B01G159400.1 | Wheat | cytosol | 59.02 | 16.59 |
| TraesCS5D01G167000.1 | Wheat | nucleus, unclear | 59.02 | 16.59 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 59.02 | 16.56 |
| KXG35258 | Sorghum | cytosol | 59.02 | 16.46 |
| TraesCS7A01G288700.1 | Wheat | nucleus | 59.02 | 16.31 |
| GSMUA_Achr4P20270_001 | Banana | cytosol | 56.83 | 16.17 |
| Zm00001d019824_P004 | Maize | cytosol | 57.92 | 16.16 |
| TraesCS7B01G182800.3 | Wheat | cytosol | 59.02 | 16.0 |
| CDY67921 | Canola | nucleus | 55.19 | 15.66 |
| VIT_03s0063g00070.t01 | Wine grape | cytosol, plastid | 66.67 | 15.5 |
| CDY46079 | Canola | nucleus | 53.01 | 15.42 |
| HORVU5Hr1G050560.1 | Barley | plastid | 59.02 | 15.38 |
| HORVU7Hr1G063970.1 | Barley | cytosol, nucleus, plastid | 60.11 | 15.36 |
| GSMUA_Achr8P24250_001 | Banana | cytosol, plastid | 53.01 | 14.97 |
| GSMUA_Achr7P05430_001 | Banana | nucleus | 60.66 | 12.28 |
| CDX91689 | Canola | nucleus | 19.13 | 11.48 |
| CDY37935 | Canola | nucleus | 39.34 | 11.06 |
| CDY03685 | Canola | nucleus | 38.25 | 10.89 |
| CDX72826 | Canola | plastid | 40.44 | 10.82 |
| CDX96344 | Canola | plastid | 40.44 | 10.82 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 37.7 | 10.65 |
| CDY41472 | Canola | cytosol, plastid | 36.61 | 10.45 |
| CDX92325 | Canola | nucleus | 18.03 | 10.25 |
| CDY36684 | Canola | plastid | 37.16 | 10.23 |
| CDY56198 | Canola | cytosol | 24.04 | 9.0 |
| CDY06734 | Canola | mitochondrion | 14.21 | 8.52 |
| CDY30168 | Canola | cytosol | 24.04 | 8.18 |
| CDX89287 | Canola | nucleus | 15.85 | 7.0 |
| CDY13992 | Canola | nucleus | 15.85 | 6.92 |
| CDY17286 | Canola | nucleus | 15.3 | 6.91 |
| CDX92537 | Canola | nucleus | 15.3 | 6.68 |
| CDX95176 | Canola | nucleus | 15.3 | 6.68 |
| CDY19874 | Canola | nucleus | 15.3 | 6.68 |
| CDY29263 | Canola | nucleus | 15.3 | 6.68 |
| CDY34835 | Canola | nucleus | 14.21 | 6.62 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 15.3 | 6.57 |
| CDY57754 | Canola | nucleus | 7.65 | 6.57 |
| CDY46671 | Canola | nucleus | 15.3 | 6.53 |
| CDY14290 | Canola | nucleus | 14.75 | 6.47 |
| CDY52067 | Canola | nucleus | 14.75 | 6.44 |
| CDY66423 | Canola | nucleus | 14.75 | 6.34 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 14.75 | 6.28 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 14.75 | 6.28 |
| CDY32840 | Canola | nucleus | 14.21 | 6.18 |
| CDY16528 | Canola | nucleus | 14.21 | 6.13 |
| CDY28101 | Canola | nucleus | 14.21 | 6.06 |
| CDY50959 | Canola | nucleus | 14.21 | 6.05 |
| CDY66740 | Canola | nucleus | 12.57 | 6.04 |
| CDY67617 | Canola | nucleus | 12.57 | 6.04 |
| CDY68866 | Canola | nucleus | 13.66 | 6.02 |
| CDY43894 | Canola | nucleus | 11.48 | 5.77 |
| CDY59539 | Canola | nucleus | 11.48 | 5.74 |
| CDY29341 | Canola | nucleus | 13.11 | 5.73 |
| CDX95462 | Canola | nucleus | 12.57 | 5.3 |
| CDY18570 | Canola | nucleus | 12.57 | 5.3 |
| CDY63384 | Canola | mitochondrion, nucleus | 12.02 | 5.26 |
| CDY22988 | Canola | nucleus | 12.02 | 5.24 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 14.21 | 5.13 |
| CDY61476 | Canola | nucleus | 10.93 | 4.77 |
| CDY02486 | Canola | nucleus | 10.93 | 4.76 |
| CDX92304 | Canola | nucleus | 10.93 | 4.72 |
| CDX99265 | Canola | nucleus | 10.93 | 4.72 |
| CDX82310 | Canola | nucleus | 10.38 | 4.61 |
| CDY51403 | Canola | nucleus | 9.84 | 4.29 |
| CDY33092 | Canola | nucleus | 9.84 | 4.24 |
| CDX81822 | Canola | mitochondrion, nucleus | 12.02 | 4.04 |
| CDY67365 | Canola | plastid | 5.46 | 3.42 |
| CDY08990 | Canola | cytosol | 1.64 | 3.03 |
| CDX79295 | Canola | cytosol, plastid | 1.64 | 3.0 |
| CDY33264 | Canola | mitochondrion, nucleus | 1.64 | 1.5 |
| CDY72408 | Canola | plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX79296 | EnsemblPlantsGene:GSBRNA2T00131947001 | Gene3D:3.30.70.330 | GO:A0A078CQ15 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR24012 | PANTHER:PTHR24012:SF349 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDX79296 | ProteinID:CDX79296.1 |
| SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EF19DD | MapMan:35.1 | : |
Description
BnaC06g20070D
Coordinates
chrLK031817:-:1112353..1113437
Molecular Weight (calculated)
19891.3 Da
IEP (calculated)
10.985
GRAVY (calculated)
-0.448
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSPFGTVTS CKVMRDPSGI SKGSGFVAFS TPEEATEAMS QMSGKMVEGK PLYVAIAQRK EDRRVRLQAQ FSQVRPVAMP SSAGPRMPMF PPGGPGIGQQ
101: MFYGQAPPNM IPPQPGYGYQ QQLVPGMRPG GRGPVPNYFM PMVQQQQQRP GGGRRPGGIQ QSQHQVLSQF TIKKNCFGLL VSL
101: MFYGQAPPNM IPPQPGYGYQ QQLVPGMRPG GRGPVPNYFM PMVQQQQQRP GGGRRPGGIQ QSQHQVLSQF TIKKNCFGLL VSL
001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
Arabidopsis Description
PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.