Factsheet for TraesCS2B01G378400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G229400.1
TraesCS4B01G087000.1
TraesCS4D01G084200.1
TraesCS5A01G115200.1
TraesCS5B01G121000.2
TraesCS5D01G126900.3
TraesCS7A01G265700.1
TraesCS7B01G166700.1
TraesCS7D01G269000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34110.1	TraesCS4A01G229400.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS4B01G087000.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS4D01G084200.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS5A01G115200.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS5B01G121000.2	AT2G43970.1	21798944
AT4G34110.1	TraesCS5D01G126900.3	AT2G43970.1	21798944
AT4G34110.1	TraesCS7A01G265700.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS7B01G166700.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS7D01G269000.1	AT2G43970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G358000.1	Wheat	cytosol	99.55	99.7
TraesCS2A01G359000.1	Wheat	cytosol	98.5	98.5
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	90.38	98.36
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	82.86	84.51
Os04t0504800-01	Rice	plasma membrane	83.61	84.37
EES12460	Sorghum	plastid	83.91	84.04
Zm00001d025801_P005	Maize	cytosol, plastid	82.26	83.9
VIT_18s0001g10170.t01	Wine grape	cytosol	69.32	72.03
GSMUA_Achr9P00990_001	Banana	cytosol	69.47	70.97
KRH70673	Soybean	nucleus	68.87	70.68
GSMUA_Achr4P09890_001	Banana	cytosol	68.72	70.09
KRH50336	Soybean	cytosol	68.57	70.05
KRH15385	Soybean	nucleus	68.12	69.48
VIT_07s0031g00210.t01	Wine grape	cytosol	67.97	69.11
GSMUA_AchrUn_...	Banana	cytosol	67.22	68.56
CDY62723	Canola	cytosol	63.46	68.4
Bra034603.1-P	Field mustard	cytosol, plastid	63.61	68.34
CDY51957	Canola	cytosol, plastid	63.46	68.17
KRH05656	Soybean	endoplasmic reticulum, nucleus	66.77	67.89
Bra011488.1-P	Field mustard	cytosol, plastid	61.35	66.56
TraesCS5B01G159400.1	Wheat	cytosol	64.96	66.36
CDX69025	Canola	nucleus, plastid	60.9	66.28
CDX75397	Canola	nucleus, plastid	61.2	66.07
AT4G34110.1	Thale cress	cytosol	62.41	65.98
CDY51045	Canola	cytosol	64.51	65.7
Bra018797.1-P	Field mustard	cytosol	64.51	65.7
CDX89664	Canola	cytosol	60.6	65.64
CDY54068	Canola	cytosol	64.36	65.54
CDX71223	Canola	cytosol	62.71	65.36
Bra013104.1-P	Field mustard	cytosol	60.0	64.77
KRH52023	Soybean	cytosol, endoplasmic reticulum	61.35	64.76
KRH61326	Soybean	cytosol, endoplasmic reticulum	60.9	64.29
CDY67364	Canola	nucleus	28.12	63.82
AT1G49760.1	Thale cress	cytosol	64.36	63.79
CDY67365	Canola	plastid	27.37	62.33
Bra015220.1-P	Field mustard	cytosol	53.98	62.11
CDY36634	Canola	nucleus	60.6	62.1
CDX79296	Canola	plastid	16.69	60.66
TraesCS7B01G182800.3	Wheat	cytosol	59.7	58.81
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	66.62	56.29
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	54.44	55.86
PGSC0003DMT400012508	Potato	nucleus	10.23	54.84
Bra022413.1-P	Field mustard	cytosol	29.32	43.72
CDX92325	Canola	nucleus	19.85	40.99
TraesCS3B01G090800.1	Wheat	mitochondrion	38.5	40.96
TraesCS4B01G204800.1	Wheat	cytosol	36.24	37.02
CDX91689	Canola	nucleus	15.49	33.77
TraesCS1B01G160900.1	Wheat	nucleus	16.84	30.43
TraesCS5B01G241400.1	Wheat	nucleus	13.83	26.9
TraesCS7B01G199000.1	Wheat	nucleus, plastid	14.44	22.8
TraesCS6B01G128900.2	Wheat	plastid	14.14	22.54
TraesCS2B01G195400.1	Wheat	nucleus	14.44	22.38
TraesCS4B01G148600.1	Wheat	nucleus	14.74	22.02
TraesCS4B01G289600.1	Wheat	nucleus	15.19	22.0
TraesCS2B01G495700.1	Wheat	nucleus	14.14	21.56
TraesCS7B01G138700.1	Wheat	mitochondrion, nucleus	14.14	21.03
TraesCS2B01G335700.1	Wheat	plastid	12.63	20.0
TraesCS2B01G247400.4	Wheat	nucleus	13.83	19.83
Solyc06g062680.1.1	Tomato	cytosol	15.49	19.4
TraesCS6B01G228100.1	Wheat	endoplasmic reticulum, plastid, vacuole	12.93	18.86
TraesCS2B01G599000.1	Wheat	nucleus	16.24	11.1
TraesCS2B01G601400.1	Wheat	nucleus	15.94	11.06
TraesCS2B01G598800.1	Wheat	nucleus	16.24	10.32

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom
InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102	PFscan:PS51309
PANTHER:PTHR24012	PANTHER:PTHR24012:SF678	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360
SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628	EnsemblPlantsGene:TraesCS2B01G378400
EnsemblPlants:TraesCS2B01G378400.1	TIGR:cd12378	TIGR:cd12379	TIGR:cd12380	TIGR:cd12381	SEG:seg

Description

No Description!

Coordinates

chr2B:-:541104880..541109525

Molecular Weight (calculated)

72500.8 Da

IEP (calculated)

9.155

GRAVY (calculated)

-0.431

Length

665 amino acids

Sequence
(BLAST)

001: MAAQVAVANG GGAGPAAAAV AVVPAPAPAA PGGVTQPLPT TSLYVGDLEA NVTDSQLYEL FSQAGQVVSV RVCRDVTSRR SLGYAYVNYS SPMDAARAME
101: ALNFAPLNNK PIRVMYSNRD PSSRRSGSAN IFIKNLDKTI DNKTLHDTFS AFGAILSCKV AMDDIGQSKG FGFVQYEKEE SAQSAMKSLN GMLINDKPVY
201: VGPFLRKQER DNSFDKAKFN NVFVKNLSES TTKDDLVKVF SEYGTITSAV VMIGMDGKSR CFGFVNFESP DDAARAVEEL NGKKINDKEW YVGRAQKKSE
301: REMDLKRRFE QSMKDAADKY QGQNLYLKNL DDGITDDQLR ELFSNFGKIT SCKIMRDQNG VSKGSGFVSF STREEASQAL TEMNGKMISG KPLYVAFAQR
401: KEDRKAMLQA QFSQMRPVPM TPSMTPRLPM YPPMPTLGQQ LFYGQAPPAM MPPQPGYGFQ QQLVPGMRPG GGAHMPNYFV PVVQPGQQGP RPGIRRNGPG
501: SAQGQQTPQP FQQQMVPRGR VYRYPPGPRH MPEVQQMPGV GVGGMVQPYD MGSFPVRDAG VSPAPPIGTL TSALANATPE QQRTILGESL YPLVEKLEHQ
601: QAAKVTGMLL EMDQTEVLHL LESPEALKSK VAEAMDVLRN VAQQQNPNAP TSQLAGLTLS DGIIS

Best Arabidopsis Sequence Match ( AT1G22760.1 )
(BLAST)

001: MAAAVATGVA PATMVDQVPS PTAQTSVQVP VSIPLPSPVV VADQTHPNSS LYAGDLDPKV TEAHLFDLFK HVANVVSVRV CRDQNRRSLG YAYINFSNPN
101: DAYRAMEALN YTPLFDRPIR IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF VQFEKEESAQ AAIDKLNGML
201: MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY
301: VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK
401: PLYIALAQRK EDRRAHLQAL FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG PGNFIVPYPL QRQPQTGPRM
501: GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE
601: RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD

Arabidopsis Description

PAB3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64380]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.