Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G593700.1 | Wheat | nucleus | 95.07 | 95.36 |
| TraesCSU01G037200.1 | Wheat | nucleus | 94.45 | 94.45 |
| TraesCS2B01G601400.1 | Wheat | nucleus | 76.05 | 77.24 |
| TraesCS2B01G598800.1 | Wheat | nucleus | 80.99 | 75.26 |
| Os04t0682400-01 | Rice | nucleus | 56.53 | 54.56 |
| KXG27463 | Sorghum | nucleus | 54.16 | 48.98 |
| TraesCS4B01G148600.1 | Wheat | nucleus | 12.54 | 27.42 |
| TraesCS2B01G195400.1 | Wheat | nucleus | 12.02 | 27.27 |
| TraesCS7B01G138700.1 | Wheat | mitochondrion, nucleus | 11.82 | 25.73 |
| TraesCS5B01G241400.1 | Wheat | nucleus | 8.84 | 25.15 |
| TraesCS2B01G495700.1 | Wheat | nucleus | 9.46 | 21.1 |
| TraesCS2B01G335700.1 | Wheat | plastid | 8.84 | 20.48 |
| TraesCS7B01G199000.1 | Wheat | nucleus, plastid | 8.84 | 20.43 |
| TraesCS6B01G128900.2 | Wheat | plastid | 8.74 | 20.38 |
| TraesCS1B01G160900.1 | Wheat | nucleus | 6.99 | 18.48 |
| TraesCS2B01G247400.4 | Wheat | nucleus | 8.74 | 18.32 |
| TraesCS4B01G289600.1 | Wheat | nucleus | 8.63 | 18.3 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 8.53 | 18.2 |
| TraesCS2B01G378400.1 | Wheat | nucleus | 11.1 | 16.24 |
| TraesCS5B01G159400.1 | Wheat | cytosol | 10.17 | 15.21 |
| TraesCS7B01G182800.3 | Wheat | cytosol | 10.07 | 14.52 |
| TraesCS4B01G204800.1 | Wheat | cytosol | 9.46 | 14.13 |
| TraesCS3B01G090800.1 | Wheat | mitochondrion | 9.04 | 14.08 |
| CDY37229 | Canola | cytosol | 1.44 | 6.57 |
| Bra039841.1-P | Field mustard | cytosol | 1.44 | 6.57 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:Hud_Sxl_RNA | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PRINTS:PR00961 |
| PFscan:PS50102 | PANTHER:PTHR43938 | PANTHER:PTHR43938:SF6 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk |
| SMART:SM00360 | SMART:SM00361 | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS2B01G599000 | EnsemblPlants:TraesCS2B01G599000.1 | TIGR:cd00590 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:781801119..781804671
Molecular Weight (calculated)
106068.0 Da
IEP (calculated)
4.738
GRAVY (calculated)
-0.364
Length
973 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRKSDLADQ LQEDGMSAVA AEYEEGSEEE EEPFEREFYD DDDDDDDSNG GEPETQAVDP CEDPLAEEEE ANEEKPCDWA TPLEDEDTSY DEPFVDELCY
101: EEEDSGEQDS YYAEPFTDQL CEVEPCDVEV AREEEFGRKY SPVQAIKKEQ NEEEVLKRTL RKGSSHEHKA VPVTDEIELK PFKKRLSVRF ATDVSCYTYS
201: TESFGAARLE KRKAQFDDHD SHLCKRQEHT VSLPQDGVTL KEVDDTNLYV GNLPTSVTSH KLIELFLPFG RIVRSKVADD RFTGVSQGYG FVKYAEPRSA
301: TAAIERMNGR LVDGKTLEVR VAGPPTSVFY PSMQAVSETC SLPSKEVDPC RLYVSNLPLS MDTLKLLEHF LRFGKVTDIK VPRDQATGLS KGYGFVKYSD
401: SHHAAQAITH LNGFLVEGKK IEVRVAEVSS TRTIKEIDMA NLYVCNIPAS IDTDKLVALF SPFGKITHAR VAADQGYGFV KFADSQCAAE AIALMNGSLV
501: EGETLIVRVA GLSPLASSSV VQGSPTPSLE MKKSRLYVAN LPRSMNADKL VELFVPFGKI SKVVINLEYS LVYYADAASV TTAVEHMDGY LIGGKSLVVK
601: RSDSCPTAAA GHAPLSSQSA GGKPTREIDM ANLYVGGFPP TVTGDQLVEL FRPFGKIVQS RMFLGYGMVR YSDPSSAAAA IDQMDGYRIG ASTLAVRVAG
701: LPNIMPRVEC LAAPQAPPGN EQKEADLTNL YVGHLPLYIT TERLTEIFLP CGQITQAKVV VDRHTGVSKG FGFVKFADTY AAAAALSYMN GYPLEGHILA
801: VRIANVHPSD MASYMARLYS QFKVPDPSTM AVGVPTSSYW PPCYSAESAY AENYRGQGTD AAASQTSQLP ESVSASSSFA AERDWSPVSS HVADSSQRQP
901: SAGWAGPPGF EPLHAHAAVS PPPPVVPWAG PPGFEPHSIP KKKDGTTATK PSQPCSKVHL AQSGGSQKRR SIV
101: EEEDSGEQDS YYAEPFTDQL CEVEPCDVEV AREEEFGRKY SPVQAIKKEQ NEEEVLKRTL RKGSSHEHKA VPVTDEIELK PFKKRLSVRF ATDVSCYTYS
201: TESFGAARLE KRKAQFDDHD SHLCKRQEHT VSLPQDGVTL KEVDDTNLYV GNLPTSVTSH KLIELFLPFG RIVRSKVADD RFTGVSQGYG FVKYAEPRSA
301: TAAIERMNGR LVDGKTLEVR VAGPPTSVFY PSMQAVSETC SLPSKEVDPC RLYVSNLPLS MDTLKLLEHF LRFGKVTDIK VPRDQATGLS KGYGFVKYSD
401: SHHAAQAITH LNGFLVEGKK IEVRVAEVSS TRTIKEIDMA NLYVCNIPAS IDTDKLVALF SPFGKITHAR VAADQGYGFV KFADSQCAAE AIALMNGSLV
501: EGETLIVRVA GLSPLASSSV VQGSPTPSLE MKKSRLYVAN LPRSMNADKL VELFVPFGKI SKVVINLEYS LVYYADAASV TTAVEHMDGY LIGGKSLVVK
601: RSDSCPTAAA GHAPLSSQSA GGKPTREIDM ANLYVGGFPP TVTGDQLVEL FRPFGKIVQS RMFLGYGMVR YSDPSSAAAA IDQMDGYRIG ASTLAVRVAG
701: LPNIMPRVEC LAAPQAPPGN EQKEADLTNL YVGHLPLYIT TERLTEIFLP CGQITQAKVV VDRHTGVSKG FGFVKFADTY AAAAALSYMN GYPLEGHILA
801: VRIANVHPSD MASYMARLYS QFKVPDPSTM AVGVPTSSYW PPCYSAESAY AENYRGQGTD AAASQTSQLP ESVSASSSFA AERDWSPVSS HVADSSQRQP
901: SAGWAGPPGF EPLHAHAAVS PPPPVVPWAG PPGFEPHSIP KKKDGTTATK PSQPCSKVHL AQSGGSQKRR SIV
001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
Arabidopsis Description
PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.