Factsheet for Os04t0682400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G594800.1	Wheat	nucleus	55.06	58.05
TraesCSU01G036300.1	Wheat	nucleus	54.76	57.86
TraesCS2B01G601400.1	Wheat	nucleus	54.76	57.62
TraesCS2B01G599000.1	Wheat	nucleus	54.56	56.53
TraesCS2D01G593700.1	Wheat	nucleus	54.27	56.39
TraesCSU01G037200.1	Wheat	nucleus	53.97	55.91
TraesCS2D01G593900.1	Wheat	nucleus	54.07	53.17
HORVU2Hr1G123110.1	Barley	nucleus, plastid	56.05	53.15
HORVU2Hr1G122920.2	Barley	nucleus	53.17	52.96
TraesCS2B01G598800.1	Wheat	nucleus	53.97	51.96
KXG27463	Sorghum	nucleus	53.27	49.91
TraesCSU01G037000.1	Wheat	plastid	55.16	49.55
Os11t0620100-01	Rice	nucleus	10.62	24.26
Os07t0615400-01	Rice	nucleus	10.22	24.12
Os08t0520300-01	Rice	nucleus	10.42	23.49
Os02t0567900-01	Rice	cytosol, nucleus	5.95	23.17
Os04t0449900-01	Rice	plastid	8.13	21.19
Os07t0516900-01	Rice	plastid	5.16	20.72
Os04t0625800-01	Rice	nucleus	8.63	20.47
Os03t0569900-01	Rice	nucleus	8.13	20.4
Os08t0190200-00	Rice	nucleus	8.73	19.91
Os09t0462700-01	Rice	mitochondrion, nucleus, plastid	8.63	19.73
Os10t0457000-01	Rice	nucleus	6.45	18.31
Os03t0174100-02	Rice	nucleus	7.34	17.79
Os04t0504800-01	Rice	plasma membrane	9.82	15.02
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	9.42	14.39
Os09t0115400-01	Rice	nucleus	9.42	14.35
Os03t0278500-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	9.03	14.06
Os06t0589700-01	Rice	cytosol, extracellular	3.27	8.27
Bra039841.1-P	Field mustard	cytosol	1.39	6.57
CDY37229	Canola	cytosol	1.39	6.57

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:4337438	UniProt:A0A0P0WGS4	ProteinID:BAS91690.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
EnsemblPlantsGene:Os04g0682400	EnsemblPlants:Os04t0682400-01	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR11208	PANTHER:PTHR11208:SF89
InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928
UniParc:UPI00039389A8	RefSeq:XP_015635038.1	SEG:seg	:	:	:

Description

Similar to H0124B04.13 protein. (Os04t0682400-01)

Coordinates

chr4:-:34832052..34837342

Molecular Weight (calculated)

110207.0 Da

IEP (calculated)

6.626

GRAVY (calculated)

-0.398

Length

1008 amino acids

Sequence
(BLAST)

0001: MNPFPHAAAA LDPSSVLNAQ YKHTHTEGEG DAGSPPNHHH HLHHLLSSRD CYCSTHCLAL LSPSSNFPLS FYSPPGSNPA RCNKPGILNL FFVNQLQAQL
0101: RGGKVTLAAQ QEGFSDKMNS GAEYEDGSEE EEPYERVFYD DEDDGNDDSI CGDPCDDSVP KEEVHRKLMH EAEPYDDLVA GEEESVENSA LQAFKKERNE
0201: QELKQAQKMG YSIKQKEIPV DMEMGMKPFK KRLVKFADDV SCYTYSTESF AAAKLEKRKA QFDDQDKHLH KKQEHTPPSF PQDGGKLKEV DNTNLYVGNL
0301: PASVGSHKLI ELFLPFGQIV RSRVVDDCFT GLSQGYGFVK YSDPRCASEA IKRMNGRLVE GRALEVRVAG FPSSEDNSQQ PSKETDMAKL YVCNLSLSMN
0401: TDRLIHLFLP FGEVTNAKVA KDHTTGLSKG YGFVQYSSPH HAAEAVIHLN GRLVDGRKIE VRVSGIPSTL PNSAVESPST TRNSAVESPS TTRTVKEIDM
0501: SNLYVCNMPS SIDTKKLVEL FLPFGKITHA RVVADPDTFS AKGYGFIKFT DSESATKAIA AMNGALVGGE MIIVRVAGLS PSASISAVQT TQDINKSRLY
0601: ITNLPRSMTA DKMVNLFAPF GQITKVLMNL EYSLVWYADA PSATKAVQHM DGYMVEGKRL VVKRSELCTT NASQAGGKPI KEIDMANLYV GRVPSSLTED
0701: QFIDLFRPFG RVVQARMFRF QRYGMVRFDN PSCAAAAIDH LDGYQIGGSI LAVRVAGLPA ESNAAKGALT SQMSSNEQGQ IDMTNLYVSH LPSYVNNERL
0801: IDLFLPCGQI TQAKVVVERY TGVSKGFGFV KFADAYSAAV ALTHMNGYPL DGHVLEVRIA GVHPDAMSSY MAHFYSHFTM HDPAKAAVGI PTSYWPHYYD
0901: ESAYNTTAEN LGQVTTTSAT DASAAQTSQK ERLPGSKSVD LVAEKDCSSA SNKVANCSES QPTAWAGPPG FEPHAISKKC TAGSNASQAC SKDHFAQSGG
1001: GHKRRSIV

Best Arabidopsis Sequence Match ( AT1G49760.1 )
(BLAST)

001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P

Arabidopsis Description

PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.