Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G036300.1 | Wheat | nucleus | 93.2 | 93.4 |
| TraesCS2B01G601400.1 | Wheat | nucleus | 92.89 | 92.69 |
| HORVU2Hr1G123110.1 | Barley | nucleus, plastid | 88.39 | 79.49 |
| TraesCS2D01G593700.1 | Wheat | nucleus | 76.78 | 75.67 |
| TraesCS2D01G593900.1 | Wheat | nucleus | 75.84 | 70.73 |
| Os04t0682400-01 | Rice | nucleus | 58.05 | 55.06 |
| KXG27463 | Sorghum | nucleus | 57.01 | 50.65 |
| TraesCS2D01G176700.1 | Wheat | nucleus | 11.3 | 25.35 |
| TraesCS4D01G150600.2 | Wheat | nucleus | 11.72 | 24.94 |
| TraesCS7D01G250300.1 | Wheat | mitochondrion, nucleus | 11.3 | 24.16 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 8.26 | 23.1 |
| TraesCS2D01G472700.1 | Wheat | nucleus | 9.41 | 20.64 |
| TraesCS2D01G315400.2 | Wheat | plastid | 8.68 | 19.58 |
| TraesCS6D01G081700.2 | Wheat | plastid | 8.37 | 19.51 |
| TraesCS2D01G266400.1 | Wheat | nucleus | 6.9 | 18.54 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 8.05 | 18.47 |
| TraesCS4D01G288600.1 | Wheat | nucleus | 8.68 | 18.16 |
| TraesCS1D01G142300.1 | Wheat | nucleus | 6.9 | 17.93 |
| TraesCS2D01G227900.5 | Wheat | nucleus | 8.68 | 17.89 |
| TraesCS3D01G076800.1 | Wheat | mitochondrion | 4.08 | 15.66 |
| TraesCS2D01G358000.1 | Wheat | cytosol | 10.67 | 15.36 |
| TraesCS7D01G287900.1 | Wheat | cytosol | 10.25 | 15.36 |
| TraesCS3D01G076700.1 | Wheat | mitochondrion | 7.01 | 15.06 |
| TraesCS5D01G167000.1 | Wheat | nucleus, unclear | 9.94 | 14.59 |
| TraesCS4D01G205700.1 | Wheat | cytosol | 9.73 | 14.24 |
| Bra039841.1-P | Field mustard | cytosol | 1.36 | 6.1 |
| CDY37229 | Canola | cytosol | 1.36 | 6.1 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G594800.1 | EnsemblPlantsGene:TraesCS2D01G594800 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk |
| PANTHER:PTHR11208 | PANTHER:PTHR11208:SF89 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SMART:SM00361 | SUPFAM:SSF54928 | TIGR:cd00590 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr2D:+:648352414..648355284
Molecular Weight (calculated)
104377.0 Da
IEP (calculated)
4.955
GRAVY (calculated)
-0.399
Length
956 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRKSDLADQ LQEDGMSAVS AEYEEGTEEE EPFEREFYDD DDDDDDDDND SEPETQAVDS CEDPLAEEEE VSGEEPCDVA APLEDEDASY EEPFVSELCY
101: EEEDSDVQDS YYPEPLTDSY RKQLYEVEPC DDQVAHEYEF VKKKSSTVQT FQKEQNKREV LKRALRKGSN NEHKAVPVVD GMEMKPLKKQ LSVRFATDVS
201: CYTYSTECFG AAKLEKRKAQ FDDQDSHLRK RQEHMLSSLK DGSKLKEVDD TNLYVGNLPA SVSSHKLIEL FLPFGRIVRS KVADDRFTGV SQGYGFVKYA
301: EPRSATAAIE RMNGRLVDGK TLEVRVAGPP TSVSNPSKQS ASETCSLPSK EIDATNLYVS HLPLSMDTLK LLNHFRPFGK VTDIKVPKDH TTGLCKGYGY
401: VKYADSRHAA QAVIHLNGLL VEGKKIEVRL SDISPTLSNS AVGSHTNTRT IKEIDMAKLY VCNIPASIDT NKLIELFLPF GKITHARVAA DQEGAHSGKG
501: YGFVKFADSQ CAAEAIALMN GALVEGETLN VRVAGLSSSA SSSAVQGSPT ASPEINKSRL YITNLPQTMN ADKLVELFMP FGRISKVVIN PDYSLVFYAD
601: VASVITAAER MDGYLIGGKR LVVRGSDSCQ TNAAEQALSQ PAGKTMKEID MANVYVGSIP PTVTGDQLVE LFRPFGQIVQ SRLFHGYGMV RYSYPSCATA
701: AIDHMDGYQI GGRTLVVRVA GLPNPGDCLT LPEHGNEQRQ IDMTNLYVCH LPLHVTTEKL IEIFLPCGQI TQAKVVIDWH TGVSRGFGFV KFADAYGAAV
801: ALTHMNGCPL EGHILGVRIA GVHPSDMGSY MTRLYSQFTL PDPSMMAVGI PTSSYWPYYC AESAYAEGQG GDAASQTSQE ESVSASSFAE KGCSSVSSHV
901: AGSSQQHSSA GWAGPPGFSP HAAPKKDTVT TMKPSQPCSK VHLAQSGGSQ KRRSIV
101: EEEDSDVQDS YYPEPLTDSY RKQLYEVEPC DDQVAHEYEF VKKKSSTVQT FQKEQNKREV LKRALRKGSN NEHKAVPVVD GMEMKPLKKQ LSVRFATDVS
201: CYTYSTECFG AAKLEKRKAQ FDDQDSHLRK RQEHMLSSLK DGSKLKEVDD TNLYVGNLPA SVSSHKLIEL FLPFGRIVRS KVADDRFTGV SQGYGFVKYA
301: EPRSATAAIE RMNGRLVDGK TLEVRVAGPP TSVSNPSKQS ASETCSLPSK EIDATNLYVS HLPLSMDTLK LLNHFRPFGK VTDIKVPKDH TTGLCKGYGY
401: VKYADSRHAA QAVIHLNGLL VEGKKIEVRL SDISPTLSNS AVGSHTNTRT IKEIDMAKLY VCNIPASIDT NKLIELFLPF GKITHARVAA DQEGAHSGKG
501: YGFVKFADSQ CAAEAIALMN GALVEGETLN VRVAGLSSSA SSSAVQGSPT ASPEINKSRL YITNLPQTMN ADKLVELFMP FGRISKVVIN PDYSLVFYAD
601: VASVITAAER MDGYLIGGKR LVVRGSDSCQ TNAAEQALSQ PAGKTMKEID MANVYVGSIP PTVTGDQLVE LFRPFGQIVQ SRLFHGYGMV RYSYPSCATA
701: AIDHMDGYQI GGRTLVVRVA GLPNPGDCLT LPEHGNEQRQ IDMTNLYVCH LPLHVTTEKL IEIFLPCGQI TQAKVVIDWH TGVSRGFGFV KFADAYGAAV
801: ALTHMNGCPL EGHILGVRIA GVHPSDMGSY MTRLYSQFTL PDPSMMAVGI PTSSYWPYYC AESAYAEGQG GDAASQTSQE ESVSASSFAE KGCSSVSSHV
901: AGSSQQHSSA GWAGPPGFSP HAAPKKDTVT TMKPSQPCSK VHLAQSGGSQ KRRSIV
001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
Arabidopsis Description
PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.