Factsheet for TraesCS7D01G287900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G229400.1
TraesCS4B01G087000.1
TraesCS4D01G084200.1
TraesCS5A01G115200.1
TraesCS5B01G121000.2
TraesCS5D01G126900.3
TraesCS7A01G265700.1
TraesCS7B01G166700.1
TraesCS7D01G269000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34110.1	TraesCS4A01G229400.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS4B01G087000.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS4D01G084200.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS5A01G115200.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS5B01G121000.2	AT2G43970.1	21798944
AT4G34110.1	TraesCS5D01G126900.3	AT2G43970.1	21798944
AT4G34110.1	TraesCS7A01G265700.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS7B01G166700.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS7D01G269000.1	AT2G43970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G288700.1	Wheat	nucleus	98.59	95.02
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	97.34	86.73
TraesCS7B01G182800.3	Wheat	cytosol	91.54	86.52
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	87.77	84.85
TraesCS5D01G167000.1	Wheat	nucleus, unclear	77.74	76.19
VIT_18s0001g10170.t01	Wine grape	cytosol	70.06	69.84
GSMUA_Achr4P20270_001	Banana	cytosol	69.59	69.05
KRH15385	Soybean	nucleus	69.28	67.79
KRH70673	Soybean	nucleus	68.5	67.44
KRH50336	Soybean	cytosol	68.65	67.28
KRH05656	Soybean	endoplasmic reticulum, nucleus	68.81	67.13
KRH52023	Soybean	cytosol, endoplasmic reticulum	65.52	66.35
KRH61326	Soybean	cytosol, endoplasmic reticulum	65.05	65.87
VIT_07s0031g00210.t01	Wine grape	cytosol	67.4	65.75
Bra013104.1-P	Field mustard	cytosol	63.48	65.75
CDY67364	Canola	nucleus	29.94	65.19
CDX89664	Canola	cytosol	62.54	64.98
Bra011488.1-P	Field mustard	cytosol, plastid	61.76	64.27
CDX69025	Canola	nucleus, plastid	61.29	63.99
CDX75397	Canola	nucleus, plastid	61.76	63.96
CDY67365	Canola	plastid	29.15	63.7
TraesCS2D01G358000.1	Wheat	cytosol	65.83	63.25
CDY54068	Canola	cytosol	64.73	63.25
AT4G34110.1	Thale cress	cytosol	62.23	63.12
Bra018797.1-P	Field mustard	cytosol	64.58	63.09
CDY51045	Canola	cytosol	64.58	63.09
CDY62723	Canola	cytosol	60.97	63.05
CDX71223	Canola	cytosol	63.01	63.01
Bra034603.1-P	Field mustard	cytosol, plastid	61.13	63.0
CDY51957	Canola	cytosol, plastid	61.13	63.0
Bra015220.1-P	Field mustard	cytosol	55.96	61.76
AT1G49760.1	Thale cress	cytosol	64.73	61.55
CDY36634	Canola	nucleus	62.07	61.02
CDX79296	Canola	plastid	17.08	59.56
PGSC0003DMT400012508	Potato	nucleus	11.44	58.87
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	67.55	54.76
TraesCS3D01G076800.1	Wheat	mitochondrion	19.91	51.0
GSMUA_Achr7P05430_001	Banana	nucleus	71.63	50.55
Bra022413.1-P	Field mustard	cytosol	32.45	46.41
TraesCS3D01G076700.1	Wheat	mitochondrion	31.35	44.94
CDX92325	Canola	nucleus	21.0	41.61
TraesCS4D01G205700.1	Wheat	cytosol	37.15	36.29
CDX91689	Canola	nucleus	15.36	32.13
TraesCS1D01G142300.1	Wheat	nucleus	16.14	27.99
TraesCS5D01G250100.1	Wheat	nucleus	14.89	27.78
TraesCS2D01G176700.1	Wheat	nucleus	14.58	21.83
TraesCS2D01G472700.1	Wheat	nucleus	14.73	21.56
TraesCS6D01G081700.2	Wheat	plastid	13.79	21.46
TraesCS4D01G288600.1	Wheat	nucleus	14.89	20.79
TraesCS2D01G266400.1	Wheat	nucleus	11.6	20.79
TraesCS2D01G315400.2	Wheat	plastid	13.48	20.28
TraesCS2D01G227900.5	Wheat	nucleus	14.58	20.04
TraesCS6D01G184600.1	Wheat	cytosol, nucleus, plastid	13.01	19.9
TraesCS4D01G150600.2	Wheat	nucleus	13.79	19.6
Solyc06g062680.1.1	Tomato	cytosol	15.36	18.46
TraesCS7D01G250300.1	Wheat	mitochondrion, nucleus	12.85	18.34
TraesCS2D01G594800.1	Wheat	nucleus	15.36	10.25
TraesCS2D01G593700.1	Wheat	nucleus	15.52	10.21
TraesCS2D01G593900.1	Wheat	nucleus	14.26	8.88

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102
PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF679	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk
SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628
EnsemblPlantsGene:TraesCS7D01G287900	EnsemblPlants:TraesCS7D01G287900.1	TIGR:cd12378	TIGR:cd12379	TIGR:cd12380	TIGR:cd12381
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7D:-:316397520..316406420

Molecular Weight (calculated)

69474.8 Da

IEP (calculated)

6.941

GRAVY (calculated)

-0.424

Length

638 amino acids

Sequence
(BLAST)

001: MEGGASPAAG AAAFPATSLY VGDLDVSVQD AQLFDVFSQV GSVVSVRVCR DVNTRMSLGY AYVNFSIPAD AARALEMLNF TPVNGKPIRI MYSNRDPSSR
101: KSGAANIFIK NLDKSIDNKA LYDTFSAFGN ILSCKVATEM SGESKGYGFV QYEQDESAQN AINELNGMLL NDKKVYVGPF VRKQERENVF GSPKFNNVYV
201: KNLSESTTED NLRELFGNFG PITSVIVVRA DDGKSRCFGF VNFENPDDAA RAVEDLNGKK FDDKELYVGR AQKKSEREMQ LKENFEKSNK ETADRNQGTN
301: LYLKNLDGSV DDDEKLKELF AEFGTITSCK VMRDSNGVNK GSGFVAFKSS EDASRALVAM NGKMVGGKPL YVALAQRKEE RRARLQAQFS QMRPVMPPPV
401: APRMPMYPPG VPGMGQQLFY GQPPPAFVNP QPGFGFQQHM IPGMRPGVAP MPNFVMPMVQ QGQQPQRPSG RRAGAGGMQQ PMPMGHQQMV PRGGRGGYRY
501: ASGRGMPDAA FRGVGAMVPS LYEMGRTTPG DTGAPQQVSS GALASALVNS PPEQQRLMLG ESLYPLVDQL EHDQAAKVTG MLLEMDQTEV LHLIESPDAL
601: KSKVAEAMEV LRSAQQQQTN VPADQLAALS LSDGFVAS

Best Arabidopsis Sequence Match ( AT2G23350.1 )
(BLAST)

001: MAQVQAPSSH SPPPPAVVND GAATASATPG IGVGGGGDGV THGALCSLYV GDLDFNVTDS QLYDYFTEVC QVVSVRVCRD AATNTSLGYG YVNYSNTDDA
101: EKAMQKLNYS YLNGKMIRIT YSSRDSSARR SGVGNLFVKN LDKSVDNKTL HEAFSGCGTI VSCKVATDHM GQSRGYGFVQ FDTEDSAKNA IEKLNGKVLN
201: DKQIFVGPFL RKEERESAAD KMKFTNVYVK NLSEATTDDE LKTTFGQYGS ISSAVVMRDG DGKSRCFGFV NFENPEDAAR AVEALNGKKF DDKEWYVGKA
301: QKKSERELEL SRRYEQGSSD GGNKFDGLNL YVKNLDDTVT DEKLRELFAE FGTITSCKVM RDPSGTSKGS GFVAFSAASE ASRVLNEMNG KMVGGKPLYV
401: ALAQRKEERR AKLQAQFSQM RPAFIPGVGP RMPIFTGGAP GLGQQIFYGQ GPPPIIPHQP GFGYQPQLVP GMRPAFFGGP MMQPGQQGPR PGGRRSGDGP
501: MRHQHQQPMP YMQPQMMPRG RGYRYPSGGR NMPDGPMPGG MVPVAYDMNV MPYSQPMSAG QLATSLANAT PAQQRTLLGE SLYPLVDQIE SEHAAKVTGM
601: LLEMDQTEVL HLLESPEALN AKVSEALDVL RNVNQPSSQG SEGNKSGSPS DLLASLSIND HL

Arabidopsis Description

PAB4Polyadenylate-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:O22173]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.