Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G138700.1 | Wheat | mitochondrion, nucleus | 99.33 | 99.33 |
| TraesCS7A01G252200.1 | Wheat | mitochondrion, nucleus | 99.33 | 99.33 |
| Os08t0520300-01 | Rice | nucleus | 93.29 | 93.29 |
| EES15356 | Sorghum | nucleus | 92.62 | 92.62 |
| HORVU7Hr1G052090.3 | Barley | nucleus | 99.11 | 89.68 |
| Zm00001d031525_P004 | Maize | nucleus | 90.38 | 86.7 |
| Zm00001d049759_P003 | Maize | nucleus | 87.7 | 85.59 |
| GSMUA_Achr9P14120_001 | Banana | nucleus | 68.23 | 75.12 |
| VIT_04s0008g02930.t01 | Wine grape | nucleus | 61.97 | 69.77 |
| KRH61952 | Soybean | mitochondrion | 66.22 | 69.65 |
| KRH52613 | Soybean | nucleus | 67.11 | 68.97 |
| TraesCS4D01G150600.2 | Wheat | nucleus | 59.06 | 58.8 |
| TraesCS2D01G176700.1 | Wheat | nucleus | 55.7 | 58.45 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 21.7 | 28.36 |
| TraesCS2D01G315400.2 | Wheat | plastid | 23.94 | 25.24 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 23.49 | 25.18 |
| TraesCS2D01G472700.1 | Wheat | nucleus | 23.94 | 24.54 |
| TraesCS2D01G227900.5 | Wheat | nucleus | 25.28 | 24.35 |
| TraesCS6D01G081700.2 | Wheat | plastid | 21.25 | 23.17 |
| TraesCS2D01G266400.1 | Wheat | nucleus | 17.9 | 22.47 |
| TraesCS4D01G288600.1 | Wheat | nucleus | 21.03 | 20.57 |
| TraesCS1D01G142300.1 | Wheat | nucleus | 15.66 | 19.02 |
| TraesCS3D01G076800.1 | Wheat | mitochondrion | 8.95 | 16.06 |
| TraesCS2D01G358000.1 | Wheat | cytosol | 21.48 | 14.46 |
| TraesCS3D01G076700.1 | Wheat | mitochondrion | 13.65 | 13.71 |
| TraesCS7D01G287900.1 | Wheat | cytosol | 18.34 | 12.85 |
| TraesCS5D01G167000.1 | Wheat | nucleus, unclear | 18.34 | 12.6 |
| TraesCS4D01G205700.1 | Wheat | cytosol | 18.12 | 12.4 |
| TraesCS2D01G593700.1 | Wheat | nucleus | 25.5 | 11.75 |
| TraesCS2D01G594800.1 | Wheat | nucleus | 24.16 | 11.3 |
| TraesCS2D01G593900.1 | Wheat | nucleus | 23.94 | 10.44 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G250300.1 | EnsemblPlantsGene:TraesCS7D01G250300 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | ncoils:Coil |
| PANTHER:PTHR44160 | PANTHER:PTHR44160:SF2 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | TIGR:cd12352 | TIGR:cd12354 | TIGR:cd12619 | MapMan:16.9.3 | : |
Description
No Description!
Coordinates
chr7D:+:222512084..222516549
Molecular Weight (calculated)
48740.0 Da
IEP (calculated)
7.322
GRAVY (calculated)
-0.506
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGAGASQQQ QQQQQRLRQQ QQQQQQALLM QQALQQQQYQ SGVLAAAAAA AMTQMEPVSN GNLPPGFDPS TCRSVYVGNV HPNVTESLLI EVFQGSGPVE
101: RCKLIRKEKS SFGFVDYYDR RSAALAIMTL HGRHIYGQAI KVNWAYASTQ REDTSGHFHI FVGDLSSEVN DATLYACFST YPSCSDARVM WDNKTGRSRG
201: YGFVSFRNQQ EAETAITEMT GKWLGSRQIR CNWATKTNAE EKQETDNHNA VVLTNGGSSN AAMEANQDTG SKENPENNPD FTTVYVGNLG HEVNRDELHR
301: HFYNLGVGAI EEVRVQQEKG FGFIRYSTHG EAALAIQMAN GLVVRGKPIK CSWGNKPTPP GTSSKPLPPP IASYQPIAMA GVPQGFTAAE LLAYQRQLAL
401: SQAAAGQIAG QHGLAGQVSA GLLAAGSQAL YDGYPSQTSA QQLMYYN
101: RCKLIRKEKS SFGFVDYYDR RSAALAIMTL HGRHIYGQAI KVNWAYASTQ REDTSGHFHI FVGDLSSEVN DATLYACFST YPSCSDARVM WDNKTGRSRG
201: YGFVSFRNQQ EAETAITEMT GKWLGSRQIR CNWATKTNAE EKQETDNHNA VVLTNGGSSN AAMEANQDTG SKENPENNPD FTTVYVGNLG HEVNRDELHR
301: HFYNLGVGAI EEVRVQQEKG FGFIRYSTHG EAALAIQMAN GLVVRGKPIK CSWGNKPTPP GTSSKPLPPP IASYQPIAMA GVPQGFTAAE LLAYQRQLAL
401: SQAAAGQIAG QHGLAGQVSA GLLAAGSQAL YDGYPSQTSA QQLMYYN
001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ
Arabidopsis Description
UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.