Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G598800.1 | Wheat | nucleus | 93.76 | 91.79 |
| HORVU2Hr1G122920.2 | Barley | nucleus | 87.22 | 88.34 |
| TraesCSU01G037000.1 | Wheat | plastid | 93.66 | 85.56 |
| TraesCS2D01G593700.1 | Wheat | nucleus | 76.49 | 80.82 |
| TraesCS2D01G594800.1 | Wheat | nucleus | 70.73 | 75.84 |
| Os04t0682400-01 | Rice | nucleus | 53.17 | 54.07 |
| KXG27463 | Sorghum | nucleus | 51.02 | 48.61 |
| TraesCS2D01G176700.1 | Wheat | nucleus | 10.63 | 25.59 |
| TraesCS4D01G150600.2 | Wheat | nucleus | 10.73 | 24.5 |
| TraesCS7D01G250300.1 | Wheat | mitochondrion, nucleus | 10.44 | 23.94 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 7.8 | 23.39 |
| TraesCS2D01G472700.1 | Wheat | nucleus | 8.88 | 20.87 |
| TraesCS6D01G081700.2 | Wheat | plastid | 8.0 | 20.0 |
| TraesCS2D01G315400.2 | Wheat | plastid | 8.2 | 19.81 |
| TraesCS1D01G142300.1 | Wheat | nucleus | 6.93 | 19.29 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 7.8 | 19.18 |
| TraesCS2D01G227900.5 | Wheat | nucleus | 8.29 | 18.32 |
| TraesCS2D01G266400.1 | Wheat | nucleus | 6.24 | 17.98 |
| TraesCS4D01G288600.1 | Wheat | nucleus | 8.0 | 17.94 |
| TraesCS3D01G076800.1 | Wheat | mitochondrion | 4.0 | 16.47 |
| TraesCS2D01G358000.1 | Wheat | cytosol | 10.34 | 15.96 |
| TraesCS3D01G076700.1 | Wheat | mitochondrion | 6.63 | 15.28 |
| TraesCS7D01G287900.1 | Wheat | cytosol | 8.88 | 14.26 |
| TraesCS5D01G167000.1 | Wheat | nucleus, unclear | 8.98 | 14.13 |
| TraesCS4D01G205700.1 | Wheat | cytosol | 8.98 | 14.09 |
| Bra039841.1-P | Field mustard | cytosol | 1.37 | 6.57 |
| CDY37229 | Canola | cytosol | 1.37 | 6.57 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:Hud_Sxl_RNA | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PRINTS:PR00961 |
| PFscan:PS50102 | PANTHER:PTHR43938 | PANTHER:PTHR43938:SF6 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk |
| SMART:SM00360 | SMART:SM00361 | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS2D01G593900 | EnsemblPlants:TraesCS2D01G593900.1 | TIGR:cd00590 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:648123459..648126536
Molecular Weight (calculated)
111344.0 Da
IEP (calculated)
4.704
GRAVY (calculated)
-0.413
Length
1025 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGCKSDLADQ LQEDGSDGMN AVAAEYEEGS EEEEPFEREF YDDDDDEDNV SEPETQAVDP CEDHLAEEEE ANGDEPCDGA TPLEDEDSSY DEPFVDELCY
0101: EEEDSGEQDS YYAEPFTDQL CEVEPCDVKV AHAENFVKKK SSPVEAIKKE QNEEEVLKQA LGKGSSHEHK AVPVTDEIEL KPFKKRLSVR FATDVSCYTY
0201: STESFGAAKL EKRKAQFDDQ DSRLCKRQEH TVSLPQEGVK LKEVDDTNLY VGNLPASVTS NKLKELFLPF GRIVQSRVAD DRFTGVSRGY GFVKYAEPRS
0301: ATAAIGRMNG RLVDGKTLEV RVAEVSVPPS VSNPSMQSVS ETYGLPSKEI DPSHLYVCNL PLAMDTLKLL EYFLPFGKVT DIRMPRDHTT GLSKGYGFVK
0401: YSDSHHAAQA IIHLNGFLVE GKKIEVRLYD SSPPRPTKEI DMANLYVCNI PVSIDTNKLV ELFSPFGKIT QARVAADQGY GFVKFADSQC AAEAIALMNG
0501: SLVEGETLIV RVAGLSSSAS SSAVQVSPIA SPEINKSRLY VTNLPRTVNA DKLVELFVPF GQISKVMINL EYSLVFYADV ASAIKAVERM DGYLIGGKRL
0601: VVRRSDSSCP TDGAEHASSQ SAAKPTREID MANLCVAGIP PTMTGDQLVE LFRPYGQIVQ SRMFRGYGMV RYENPSSAAA AIDHMDGYLI GGSTLAVRIS
0701: GLPNPVDFNA AANAPLTLQQ RPANANAAAT NPMDPYAATN APPTPQLQQP WPANGPQKHI DMTNLYVCHL PPYITTQKLT ELFLPCGQIT QAKAVVDLCT
0801: GVCKGYGFVK FADTYASAVA LTYMNGYPLE GHILEVRIAG VHQSAMGGYM AHLYSQFTVP DPSKTAIGVP TSHWPYHCAA ESAYTENQGQ GTDAASQTSQ
0901: PPESLSASSS FAPDMEWSPV SSTHLADTSS QQQQLSSHAT DTSSQQQQQP SAGWAGPPGF EPHHVHAAVS PPQPPSSAVP WAGPPGFEPH SIPKKDAAAG
1001: TKPSQRCSKV HLAQSGGSQK RRSIV
0101: EEEDSGEQDS YYAEPFTDQL CEVEPCDVKV AHAENFVKKK SSPVEAIKKE QNEEEVLKQA LGKGSSHEHK AVPVTDEIEL KPFKKRLSVR FATDVSCYTY
0201: STESFGAAKL EKRKAQFDDQ DSRLCKRQEH TVSLPQEGVK LKEVDDTNLY VGNLPASVTS NKLKELFLPF GRIVQSRVAD DRFTGVSRGY GFVKYAEPRS
0301: ATAAIGRMNG RLVDGKTLEV RVAEVSVPPS VSNPSMQSVS ETYGLPSKEI DPSHLYVCNL PLAMDTLKLL EYFLPFGKVT DIRMPRDHTT GLSKGYGFVK
0401: YSDSHHAAQA IIHLNGFLVE GKKIEVRLYD SSPPRPTKEI DMANLYVCNI PVSIDTNKLV ELFSPFGKIT QARVAADQGY GFVKFADSQC AAEAIALMNG
0501: SLVEGETLIV RVAGLSSSAS SSAVQVSPIA SPEINKSRLY VTNLPRTVNA DKLVELFVPF GQISKVMINL EYSLVFYADV ASAIKAVERM DGYLIGGKRL
0601: VVRRSDSSCP TDGAEHASSQ SAAKPTREID MANLCVAGIP PTMTGDQLVE LFRPYGQIVQ SRMFRGYGMV RYENPSSAAA AIDHMDGYLI GGSTLAVRIS
0701: GLPNPVDFNA AANAPLTLQQ RPANANAAAT NPMDPYAATN APPTPQLQQP WPANGPQKHI DMTNLYVCHL PPYITTQKLT ELFLPCGQIT QAKAVVDLCT
0801: GVCKGYGFVK FADTYASAVA LTYMNGYPLE GHILEVRIAG VHQSAMGGYM AHLYSQFTVP DPSKTAIGVP TSHWPYHCAA ESAYTENQGQ GTDAASQTSQ
0901: PPESLSASSS FAPDMEWSPV SSTHLADTSS QQQQLSSHAT DTSSQQQQQP SAGWAGPPGF EPHHVHAAVS PPQPPSSAVP WAGPPGFEPH SIPKKDAAAG
1001: TKPSQRCSKV HLAQSGGSQK RRSIV
001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
Arabidopsis Description
PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.