Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G593900.1 | Wheat | nucleus | 85.56 | 93.66 |
| TraesCS2B01G598800.1 | Wheat | nucleus | 85.56 | 91.69 |
| HORVU2Hr1G122920.2 | Barley | nucleus | 79.41 | 88.04 |
| TraesCSU01G037200.1 | Wheat | nucleus | 71.03 | 81.91 |
| TraesCSU01G036300.1 | Wheat | nucleus | 64.71 | 76.1 |
| Os04t0682400-01 | Rice | nucleus | 49.55 | 55.16 |
| KXG27463 | Sorghum | nucleus | 46.88 | 48.88 |
| Bra039841.1-P | Field mustard | cytosol | 1.16 | 6.1 |
| CDY37229 | Canola | cytosol | 1.16 | 6.1 |
Protein Annotations
| EnsemblPlants:TraesCSU01G037000.1 | EnsemblPlantsGene:TraesCSU01G037000 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk |
| ncoils:Coil | PANTHER:PTHR11208 | PANTHER:PTHR11208:SF89 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SMART:SM00361 | SUPFAM:SSF54928 | TIGR:cd00590 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrUn:+:31304298..31309568
Molecular Weight (calculated)
120340.0 Da
IEP (calculated)
4.795
GRAVY (calculated)
-0.443
Length
1122 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLRSSSHAAR THPPPPPPSR LLLLXXXXXX XXXXXXXXXX XXRRKPSPPL PPRARTAASV SVRPSVAVRP RRQRKKVVGA RMGHKSDLAD QLQEDGSDGM
0101: NAVAAEYEEC SEEEEPFERE FYDDDDDDDD DDDDDDDDDD DDDKENVGEP ETQAVDPCDD PFAEEEEANA EEPCGGITPL EDEDASYDEP FVDELCYEEE
0201: DSGEQDSYYA EPFTDQLCEV EPCDVEVAHE EKFVKKKSSP VQAIKKEQNE EEVLKQALGK GSSHEHKVVP VTDEIELKPF KKRLSVRFAT DVSCYTYSTE
0301: SFGAARLEKR KAQFDDQDSR LCKRQEHTVS LPQEGVKLKE VDDTNLYVGN LPASVTSNKL KELFLPFGRI VQSRVADDRF TGVSRGYGFV KYAEPRSATA
0401: AIERMNGRLV DGKTLEVRVA AVPAPPSVSN PSMQSVSETC SLPSKEIDPS YLYVCNLPSA MDTLKLLEYF LPFGKVTDIR MPRDHTTGLS KGYGFVKYSD
0501: SHHAAQAIIH LNGFLVEGKK IDVRVYDTSP PRPNKEIDMA NLYVCNIPVS IDTNKLVELF SPFGKITHAR VAADQGYGFV KFADSQCAAE AIALMNGSLV
0601: EGETLIVRVA GLSSSASSSA VQGSPIASPE INKFRLYVTN LPRTVNADKL VELFVPFGRI SKVMINLEYS LVFYADVASA IKAVERMDGY LIGGKRLVVR
0701: RSDSSCPTDG AEHGSSQSAA KPMREIDMAN LCVAGIPPTI TGDQLVELFR PYGQIVQSRM FRGYGMVRYQ NSSSAAAAID HMDGYLIGGS TLAVRVSGLP
0801: NPVDFNAAAN APLTLQQRPA NANAAATNPM DLNAATNAPP TLQLQQPWPA NGQQKQIDMT NLYVCHLPPY VTTEKLIELF LPCGQITQAK AVVDLCTGVC
0901: KGYGFVKFAD TYASAVALSY MNGYLLEGHI LEVRIAGVHQ SAMGSYMAHL YSQFTVPDPS KTAIGVPTSH WPYHFAAESA YTENRGQGTD AASQTSQPPE
1001: SLSASSSFAP DMEWSPVSST HLADTSSQQQ QLSSHVTDTS SQQQQQSSAG WAGPPGFEPP HAHASVSPPQ PPPSAVPWAG PPGFEPHSIP KKDAATATKP
1101: SQPCSKVHLA ESGGSLKRRS IV
0101: NAVAAEYEEC SEEEEPFERE FYDDDDDDDD DDDDDDDDDD DDDKENVGEP ETQAVDPCDD PFAEEEEANA EEPCGGITPL EDEDASYDEP FVDELCYEEE
0201: DSGEQDSYYA EPFTDQLCEV EPCDVEVAHE EKFVKKKSSP VQAIKKEQNE EEVLKQALGK GSSHEHKVVP VTDEIELKPF KKRLSVRFAT DVSCYTYSTE
0301: SFGAARLEKR KAQFDDQDSR LCKRQEHTVS LPQEGVKLKE VDDTNLYVGN LPASVTSNKL KELFLPFGRI VQSRVADDRF TGVSRGYGFV KYAEPRSATA
0401: AIERMNGRLV DGKTLEVRVA AVPAPPSVSN PSMQSVSETC SLPSKEIDPS YLYVCNLPSA MDTLKLLEYF LPFGKVTDIR MPRDHTTGLS KGYGFVKYSD
0501: SHHAAQAIIH LNGFLVEGKK IDVRVYDTSP PRPNKEIDMA NLYVCNIPVS IDTNKLVELF SPFGKITHAR VAADQGYGFV KFADSQCAAE AIALMNGSLV
0601: EGETLIVRVA GLSSSASSSA VQGSPIASPE INKFRLYVTN LPRTVNADKL VELFVPFGRI SKVMINLEYS LVFYADVASA IKAVERMDGY LIGGKRLVVR
0701: RSDSSCPTDG AEHGSSQSAA KPMREIDMAN LCVAGIPPTI TGDQLVELFR PYGQIVQSRM FRGYGMVRYQ NSSSAAAAID HMDGYLIGGS TLAVRVSGLP
0801: NPVDFNAAAN APLTLQQRPA NANAAATNPM DLNAATNAPP TLQLQQPWPA NGQQKQIDMT NLYVCHLPPY VTTEKLIELF LPCGQITQAK AVVDLCTGVC
0901: KGYGFVKFAD TYASAVALSY MNGYLLEGHI LEVRIAGVHQ SAMGSYMAHL YSQFTVPDPS KTAIGVPTSH WPYHFAAESA YTENRGQGTD AASQTSQPPE
1001: SLSASSSFAP DMEWSPVSST HLADTSSQQQ QLSSHVTDTS SQQQQQSSAG WAGPPGFEPP HAHASVSPPQ PPPSAVPWAG PPGFEPHSIP KKDAATATKP
1101: SQPCSKVHLA ESGGSLKRRS IV
001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
Arabidopsis Description
PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.