Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G601400.1 | Wheat | nucleus | 94.76 | 94.36 |
| TraesCS2D01G594800.1 | Wheat | nucleus | 93.4 | 93.2 |
| HORVU2Hr1G123110.1 | Barley | nucleus, plastid | 88.57 | 79.49 |
| TraesCSU01G037200.1 | Wheat | nucleus | 75.89 | 74.41 |
| TraesCSU01G037000.1 | Wheat | plastid | 76.1 | 64.71 |
| Os04t0682400-01 | Rice | nucleus | 57.86 | 54.76 |
| KXG27463 | Sorghum | nucleus | 56.6 | 50.19 |
| Bra039841.1-P | Field mustard | cytosol | 1.36 | 6.1 |
| CDY37229 | Canola | cytosol | 1.36 | 6.1 |
Protein Annotations
| EnsemblPlants:TraesCSU01G036300.1 | EnsemblPlantsGene:TraesCSU01G036300 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk |
| PANTHER:PTHR11208 | PANTHER:PTHR11208:SF89 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SMART:SM00361 | SUPFAM:SSF54928 | TIGR:cd00590 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chrUn:-:31088712..31091576
Molecular Weight (calculated)
104111.0 Da
IEP (calculated)
5.022
GRAVY (calculated)
-0.377
Length
954 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRKSDLADQ PQEDGMSAVP AEYEEGSEEE EPFEREFYDD DDDDDNDSES ETQAVDSCED PLAEEEEVSG EEPCDVAAPL EDEDASYEEP FVSELCYEEE
101: DSGEQDSYYP EPLTDSYRKQ LYEVEPCDDQ VDHEYEFVKK KSSTVQTINT EQNMKVVLKR ALRKGSSNEH KAVPVIDDME MKPLKKPLSV RFATDVSCYT
201: YSTESFGPAK LEKRKAQFDD QDSHLRKKQE HILPSLKDCG KLKEVDDTNL YVGNLPASVS SHKLIELFLP FGRIVRSKVA DDRFTGVSQG YGFVKYAEPR
301: SATAAIERMN GRLVDGKTLE VRVAGPPTSV SNPSKQSVSE TCSLPSKEID ASYLYVSHLP LSMDTLKLLN HFRPFGKVTE IKVPKDHTTG LSKGYGHVKY
401: ADSRDAAQAI IHLNGVLVEG KRLEVRLSDI SPTLSNSAVG SHTNTRTIKE IDMANLYVCN IPASIDTNKL IELFLPFGKI THARVAADQE GAHSGKGYGF
501: VKFADSQCAA EAIALMNGAL VQGETLIVRV AGLSSSASSS SAVQGSPIAS PEINKSRLYI TNLPRTMNAD KLVELFVPFG RISKVVINPE YSLMFYADVA
601: SAITAAERMD GYLIGGKRLV VRGSDSCQTN AAEQALSQPA GKPMKEIDMA NVYVGSIPPT VTGDQLVELF RPFGKIVQSR LFHGYGMVRY SYPSCATAAI
701: DHMDGYKIGG RTLVVRVAGL PNPGDCLTLP APGNEQRQID MTNLYVCHLP LHVTTEKLIE IFLPCGQITQ AKVVIDWHTS ASRGFGFVKF ADAYGAAVAL
801: THMNGCPLEG HILGVRIAGV HPSDMDSYMM RLYSQFTLPD PSVMAVGIPT SSYWPYYCAE SAYTEGQGAD AASQTSQEES VSASSFAEKG CSSVSSHVAD
901: RSQQHSSAGW AGPPGFSPHA APKKNTATVM KPSQPCSKVH LAQSGGSQKR RSVV
101: DSGEQDSYYP EPLTDSYRKQ LYEVEPCDDQ VDHEYEFVKK KSSTVQTINT EQNMKVVLKR ALRKGSSNEH KAVPVIDDME MKPLKKPLSV RFATDVSCYT
201: YSTESFGPAK LEKRKAQFDD QDSHLRKKQE HILPSLKDCG KLKEVDDTNL YVGNLPASVS SHKLIELFLP FGRIVRSKVA DDRFTGVSQG YGFVKYAEPR
301: SATAAIERMN GRLVDGKTLE VRVAGPPTSV SNPSKQSVSE TCSLPSKEID ASYLYVSHLP LSMDTLKLLN HFRPFGKVTE IKVPKDHTTG LSKGYGHVKY
401: ADSRDAAQAI IHLNGVLVEG KRLEVRLSDI SPTLSNSAVG SHTNTRTIKE IDMANLYVCN IPASIDTNKL IELFLPFGKI THARVAADQE GAHSGKGYGF
501: VKFADSQCAA EAIALMNGAL VQGETLIVRV AGLSSSASSS SAVQGSPIAS PEINKSRLYI TNLPRTMNAD KLVELFVPFG RISKVVINPE YSLMFYADVA
601: SAITAAERMD GYLIGGKRLV VRGSDSCQTN AAEQALSQPA GKPMKEIDMA NVYVGSIPPT VTGDQLVELF RPFGKIVQSR LFHGYGMVRY SYPSCATAAI
701: DHMDGYKIGG RTLVVRVAGL PNPGDCLTLP APGNEQRQID MTNLYVCHLP LHVTTEKLIE IFLPCGQITQ AKVVIDWHTS ASRGFGFVKF ADAYGAAVAL
801: THMNGCPLEG HILGVRIAGV HPSDMDSYMM RLYSQFTLPD PSVMAVGIPT SSYWPYYCAE SAYTEGQGAD AASQTSQEES VSASSFAEKG CSSVSSHVAD
901: RSQQHSSAGW AGPPGFSPHA APKKNTATVM KPSQPCSKVH LAQSGGSQKR RSVV
001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
Arabidopsis Description
PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.