Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G036300.1 | Wheat | nucleus | 94.36 | 94.76 |
| TraesCS2D01G594800.1 | Wheat | nucleus | 92.69 | 92.89 |
| HORVU2Hr1G123110.1 | Barley | nucleus, plastid | 88.0 | 79.3 |
| TraesCS2B01G599000.1 | Wheat | nucleus | 77.24 | 76.05 |
| TraesCS2B01G598800.1 | Wheat | nucleus | 75.99 | 69.53 |
| Os04t0682400-01 | Rice | nucleus | 57.62 | 54.76 |
| KXG27463 | Sorghum | nucleus | 56.58 | 50.37 |
| TraesCS2B01G195400.1 | Wheat | nucleus | 11.9 | 26.57 |
| TraesCS4B01G148600.1 | Wheat | nucleus | 12.11 | 26.07 |
| TraesCS7B01G138700.1 | Wheat | mitochondrion, nucleus | 11.38 | 24.38 |
| TraesCS5B01G241400.1 | Wheat | nucleus | 8.66 | 24.27 |
| TraesCS2B01G495700.1 | Wheat | nucleus | 9.81 | 21.56 |
| TraesCS2B01G335700.1 | Wheat | plastid | 9.08 | 20.71 |
| TraesCS7B01G199000.1 | Wheat | nucleus, plastid | 9.08 | 20.67 |
| TraesCS6B01G128900.2 | Wheat | plastid | 8.98 | 20.62 |
| TraesCS4B01G289600.1 | Wheat | nucleus | 9.08 | 18.95 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 8.66 | 18.2 |
| TraesCS2B01G247400.4 | Wheat | nucleus | 8.77 | 18.1 |
| TraesCS1B01G160900.1 | Wheat | nucleus | 6.89 | 17.93 |
| TraesCS2B01G378400.1 | Wheat | nucleus | 11.06 | 15.94 |
| TraesCS5B01G159400.1 | Wheat | cytosol | 10.44 | 15.36 |
| TraesCS7B01G182800.3 | Wheat | cytosol | 10.33 | 14.67 |
| TraesCS4B01G204800.1 | Wheat | cytosol | 9.81 | 14.44 |
| TraesCS3B01G090800.1 | Wheat | mitochondrion | 8.98 | 13.76 |
| Bra039841.1-P | Field mustard | cytosol | 1.46 | 6.57 |
| CDY37229 | Canola | cytosol | 1.46 | 6.57 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR11208 | PANTHER:PTHR11208:SF89 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 | SUPFAM:SSF54928 |
| EnsemblPlantsGene:TraesCS2B01G601400 | EnsemblPlants:TraesCS2B01G601400.1 | TIGR:cd00590 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2B:+:784273678..784276554
Molecular Weight (calculated)
104319.0 Da
IEP (calculated)
4.871
GRAVY (calculated)
-0.378
Length
958 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCKSDLADQ PQEDGMSAVP AEYEEGSEEE EPFEREFYDD DDDDEEDDND SEPETQAVDS CEDPLAEEEE VSGEEPCDVA APLEDEDASY EEPFVSELCY
101: EEEDSDEQDS YYPEPLTDSY RMQLYEVEPC DDQVAHEYEF VKKKSSTVQT INKERNMKVV LKRALRKGSS NEHKAVPVID DMEMRPLKKP LSVRFATDVS
201: CYTYSTESFG PAKLVKRKAQ FDDQDSHLRK RQEYILSSLK DGCKLKEVDD TNLYVGNLPT SVTSHKLIEL FLPFGRIVRS KVADDRFTGV SQGYGFVKYA
301: EPRSATAAIE RMNGRLVDGK TLEVRVAGPP TSVSHPSKQS VSETCSLPSK EIDSSSLYVS HLPLSMDTLK LLNHFRPFGK VTEIKVPKDH TTGLSKGYGH
401: VKYADSRDAA QAIIHLNGVL VEGKRIEVRL SDISPTLSNS AVGSHTNTRT IKEIDMANLY VCNIPASVDT NKLIELFLPF GKITHARVAA DQEGAHSGKG
501: YGFVKFADSQ CAAEAIALMN GALVEGETLI VRVAGLSSAA SSSSAVQGSP TASPEINKSR LYITNLPQTM NADKLVELFV PFGRISKVVI NPEYSLVYYA
601: DAASAITATE HMDGYLIGGK RLVVRGSDSS CQTNAAEQAL SLPAGKPAKE IDMANVYVGS IPPTVTGDQL VELFRPFGQI VQSRLFHGYG MVRYSHPSCA
701: TAAIDHMDGY QIGGRTLVVR VAGLPNPGDC LTLPEPGNEQ RQIDMTNLYV CHLPLHVTTE KLIEIFLPCG QITQAKVVID WHTGASRGFG FVKFADAYGA
801: AVALTHMNGC PLEGRILGVR IAGVHPSDMG SYMARLYSRF TLPDPTTMAV GIPTSSYWPY YCAESAYAEG QGADAASQTS QEESVSAGSF AEKGCSSVSS
901: HVADSSRQHS SAGWAGPPGF SPHAGPKKDT ATVMKPSQPC SKVHLAQSGG SQKRRSIV
101: EEEDSDEQDS YYPEPLTDSY RMQLYEVEPC DDQVAHEYEF VKKKSSTVQT INKERNMKVV LKRALRKGSS NEHKAVPVID DMEMRPLKKP LSVRFATDVS
201: CYTYSTESFG PAKLVKRKAQ FDDQDSHLRK RQEYILSSLK DGCKLKEVDD TNLYVGNLPT SVTSHKLIEL FLPFGRIVRS KVADDRFTGV SQGYGFVKYA
301: EPRSATAAIE RMNGRLVDGK TLEVRVAGPP TSVSHPSKQS VSETCSLPSK EIDSSSLYVS HLPLSMDTLK LLNHFRPFGK VTEIKVPKDH TTGLSKGYGH
401: VKYADSRDAA QAIIHLNGVL VEGKRIEVRL SDISPTLSNS AVGSHTNTRT IKEIDMANLY VCNIPASVDT NKLIELFLPF GKITHARVAA DQEGAHSGKG
501: YGFVKFADSQ CAAEAIALMN GALVEGETLI VRVAGLSSAA SSSSAVQGSP TASPEINKSR LYITNLPQTM NADKLVELFV PFGRISKVVI NPEYSLVYYA
601: DAASAITATE HMDGYLIGGK RLVVRGSDSS CQTNAAEQAL SLPAGKPAKE IDMANVYVGS IPPTVTGDQL VELFRPFGQI VQSRLFHGYG MVRYSHPSCA
701: TAAIDHMDGY QIGGRTLVVR VAGLPNPGDC LTLPEPGNEQ RQIDMTNLYV CHLPLHVTTE KLIEIFLPCG QITQAKVVID WHTGASRGFG FVKFADAYGA
801: AVALTHMNGC PLEGRILGVR IAGVHPSDMG SYMARLYSRF TLPDPTTMAV GIPTSSYWPY YCAESAYAEG QGADAASQTS QEESVSAGSF AEKGCSSVSS
901: HVADSSRQHS SAGWAGPPGF SPHAGPKKDT ATVMKPSQPC SKVHLAQSGG SQKRRSIV
001: MAQVQLQGQT PNGSTAAVTS APATSGGATA TQFGNTSLYV GDLDFNVTDS QLFDAFGQMG TVVTVRVCRD LVTRRSLGYG YVNFTNPQDA ARAIQELNYI
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS
Arabidopsis Description
PAB2Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A178UWB3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.