Factsheet for TraesCS3B01G090800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G076800.1	Wheat	mitochondrion, nucleus, plasma membrane, plastid	81.6	91.4
TraesCS3D01G076800.1	Wheat	mitochondrion	35.84	89.96
TraesCS3D01G076700.1	Wheat	mitochondrion	61.6	86.52
Os06t0589700-01	Rice	cytosol, extracellular	31.2	48.87
EER89984	Sorghum	plastid	48.48	48.02
Zm00001d046487_P001	Maize	cytosol	48.8	47.43
TraesCS5B01G159400.1	Wheat	cytosol	40.48	38.86
TraesCS2B01G378400.1	Wheat	nucleus	40.96	38.5
TraesCS7B01G182800.3	Wheat	cytosol	39.2	36.3
TraesCS4B01G204800.1	Wheat	cytosol	32.0	30.72
TraesCS1B01G160900.1	Wheat	nucleus	14.08	23.91
TraesCS5B01G241400.1	Wheat	nucleus	12.16	22.22
TraesCS2B01G195400.1	Wheat	nucleus	13.12	19.11
TraesCS4B01G148600.1	Wheat	nucleus	13.12	18.43
TraesCS2B01G247400.4	Wheat	nucleus	13.12	17.67
TraesCS6B01G128900.2	Wheat	plastid	11.68	17.51
TraesCS7B01G138700.1	Wheat	mitochondrion, nucleus	12.48	17.45
TraesCS2B01G495700.1	Wheat	nucleus	12.16	17.43
TraesCS2B01G335700.1	Wheat	plastid	11.68	17.38
TraesCS4B01G289600.1	Wheat	nucleus	12.48	16.99
TraesCS7B01G199000.1	Wheat	nucleus, plastid	11.2	16.63
TraesCS6B01G228100.1	Wheat	endoplasmic reticulum, plastid, vacuole	11.84	16.23
TraesCS2B01G599000.1	Wheat	nucleus	14.08	9.04
TraesCS2B01G601400.1	Wheat	nucleus	13.76	8.98
TraesCS2B01G598800.1	Wheat	nucleus	12.96	7.74

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR24012
PANTHER:PTHR24012:SF620	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM00517	SUPFAM:SSF54928
SUPFAM:SSF63570	TIGRFAMs:TIGR01628	EnsemblPlantsGene:TraesCS3B01G090800	EnsemblPlants:TraesCS3B01G090800.1	TIGR:cd12378	SEG:seg

Description

No Description!

Coordinates

chr3B:+:59749640..59755206

Molecular Weight (calculated)

68434.5 Da

IEP (calculated)

9.397

GRAVY (calculated)

-0.323

Length

625 amino acids

Sequence
(BLAST)

001: MAGRPLLAPA VTLRPPGPAL GSRASLYVGD LDDGVAEGHI YALFCQVAPV AFLRVCRDVT GRSLGYAYVN FYSREDAQRA LDSLNFTPAN GKHIRVMFSN
101: RDPTLRLSGK ANIFIKNLVP NIDGKSLSDM FGRYGTILSC KVATHFNGQS KGYGFVQFAE ETSANDAIDS LNGKRIFVGL FIRRQERQPN ISLSNYTNVY
201: VKNLPKEFTH NDLLQEFGPF GTITSAVIMR DSDGISKCFG FVNYRESECA AEAVKSLNGK MIKDTILYVG RAQKKSERKA KLKENFEHAR NEKFKKFEGL
301: NLYVKNLDDS INDLNLRGLF EFFGEIGSCK VMVDSQGRSK GYGFVSFTTI EAVHKAIDGM NRKIVSKKPL YVGVAQRKEE RRAMLVAHFA RIQNAGVLAP
401: AVPQNFAPHQ FYVGPGVPGM FPPQVPAGFG YQQFPQQHFT PWVPSGMTPY TYNLPRPLHH AGRGAHQEIN LHRQMVYPNA NQAFTYMPNS MNVNVNSVMV
501: PPGFAHIDST VSTPSVPSKN TTTTAVDSSD PEKQHLIQGE KLYPLAEELK PELGGKVTGM LGEAMEALQR RKVEDASDTV DLASVPSTST LSASRDAIDP
601: TSTTSSSSAS ADGANLAPAP SSSSA

Best Arabidopsis Sequence Match ( AT1G22760.1 )
(BLAST)

001: MAAAVATGVA PATMVDQVPS PTAQTSVQVP VSIPLPSPVV VADQTHPNSS LYAGDLDPKV TEAHLFDLFK HVANVVSVRV CRDQNRRSLG YAYINFSNPN
101: DAYRAMEALN YTPLFDRPIR IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF VQFEKEESAQ AAIDKLNGML
201: MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY
301: VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK
401: PLYIALAQRK EDRRAHLQAL FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG PGNFIVPYPL QRQPQTGPRM
501: GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE
601: RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD

Arabidopsis Description

PAB3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64380]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.