Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G014200.1 | Wheat | nucleus | 89.98 | 99.28 |
| HORVU4Hr1G075700.5 | Barley | nucleus | 89.54 | 98.8 |
| TraesCS4D01G288600.1 | Wheat | nucleus | 95.64 | 96.06 |
| Os03t0174100-02 | Rice | nucleus | 78.65 | 86.78 |
| EER95414 | Sorghum | nucleus | 76.47 | 84.58 |
| GSMUA_Achr8P31320_001 | Banana | nucleus | 60.78 | 69.75 |
| PGSC0003DMT400018998 | Potato | nucleus | 62.53 | 68.66 |
| Solyc11g065880.1.1 | Tomato | nucleus | 62.31 | 68.59 |
| VIT_06s0004g02040.t01 | Wine grape | nucleus | 66.45 | 68.54 |
| KRH23136 | Soybean | cytosol | 61.22 | 67.06 |
| KRH29709 | Soybean | cytosol | 57.52 | 65.84 |
| KRH24702 | Soybean | nucleus | 56.86 | 65.09 |
| AT5G19350.1 | Thale cress | cytosol | 59.91 | 64.71 |
| CDX92537 | Canola | nucleus | 57.95 | 63.48 |
| Bra002230.1-P | Field mustard | nucleus | 57.95 | 63.48 |
| CDY13992 | Canola | nucleus | 57.73 | 63.25 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 57.73 | 61.63 |
| KRH10201 | Soybean | mitochondrion, nucleus, plastid | 39.43 | 61.56 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 57.52 | 61.4 |
| Bra006502.1-P | Field mustard | nucleus | 57.52 | 61.4 |
| TraesCS5B01G241400.1 | Wheat | nucleus | 42.48 | 57.02 |
| TraesCS6B01G128900.2 | Wheat | plastid | 46.62 | 51.32 |
| TraesCS7B01G199000.1 | Wheat | nucleus, plastid | 46.84 | 51.07 |
| TraesCS2B01G495700.1 | Wheat | nucleus | 46.84 | 49.31 |
| TraesCS2B01G247400.4 | Wheat | nucleus | 44.23 | 43.75 |
| TraesCS2B01G335700.1 | Wheat | plastid | 39.43 | 43.1 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 41.18 | 41.45 |
| Zm00001d027869_P002 | Maize | nucleus | 58.82 | 35.39 |
| TraesCS2B01G195400.1 | Wheat | nucleus | 21.13 | 22.61 |
| TraesCS4B01G148600.1 | Wheat | nucleus | 21.57 | 22.25 |
| TraesCS7B01G138700.1 | Wheat | mitochondrion, nucleus | 20.48 | 21.03 |
| TraesCS1B01G160900.1 | Wheat | nucleus | 14.16 | 17.66 |
| TraesCS2B01G378400.1 | Wheat | nucleus | 22.0 | 15.19 |
| TraesCS5B01G159400.1 | Wheat | cytosol | 20.7 | 14.59 |
| TraesCS4B01G204800.1 | Wheat | cytosol | 19.83 | 13.98 |
| TraesCS7B01G182800.3 | Wheat | cytosol | 20.04 | 13.63 |
| TraesCS3B01G090800.1 | Wheat | mitochondrion | 16.99 | 12.48 |
| TraesCS2B01G601400.1 | Wheat | nucleus | 18.95 | 9.08 |
| TraesCS2B01G599000.1 | Wheat | nucleus | 18.3 | 8.63 |
| TraesCS2B01G598800.1 | Wheat | nucleus | 17.86 | 7.83 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR43955 | PANTHER:PTHR43955:SF8 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| EnsemblPlantsGene:TraesCS4B01G289600 | EnsemblPlants:TraesCS4B01G289600.1 | TIGR:cd12344 | TIGR:cd12345 | TIGR:cd12346 | SEG:seg |
Description
No Description!
Coordinates
chr4B:+:574442287..574447047
Molecular Weight (calculated)
50296.8 Da
IEP (calculated)
6.448
GRAVY (calculated)
-0.546
Length
459 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNHRDRPGP RTPDQTPHHR PLAAAPPTQA KPHRPPSQGA ATPMMMAGPY HQPTTLEEVR TLWIGDLQYW ADENYLYGCF AHTGEVQSVK LIRNKLSGLP
101: EGYGFIEFIS HEAAEKVLQA YNGAQMPGTE HTFRLNWASF SSGEKRPDAG PDHSIFVGDL APDVTDYLLQ ETFRVNYSSV RGAKVVTDPN TGRSKGYGFV
201: KFADENEKTR AMSEMNGVYC STRPMRISAA IPKKSSGSQL QYGAAKAMYP ATAYAIPQAQ TVLPDSDPTN TTIFIGNLDP NVTEEELRQI CVQFGELIYV
301: KIPVGKGCGF VQYASRASAE EAVQRLHGTV IGQQVVRLSW GRSPANKQDQ SAAWGQQTDP NQWSAYYSYG YDPYGYPQDP SYAYGAYAGY AQYPQQVEGA
401: TDMASAAGGH APGMEQNEVC DPMSLPDVEK LNASYMAVHG SAMLGRHLWL KTSPLSQSA
101: EGYGFIEFIS HEAAEKVLQA YNGAQMPGTE HTFRLNWASF SSGEKRPDAG PDHSIFVGDL APDVTDYLLQ ETFRVNYSSV RGAKVVTDPN TGRSKGYGFV
201: KFADENEKTR AMSEMNGVYC STRPMRISAA IPKKSSGSQL QYGAAKAMYP ATAYAIPQAQ TVLPDSDPTN TTIFIGNLDP NVTEEELRQI CVQFGELIYV
301: KIPVGKGCGF VQYASRASAE EAVQRLHGTV IGQQVVRLSW GRSPANKQDQ SAAWGQQTDP NQWSAYYSYG YDPYGYPQDP SYAYGAYAGY AQYPQQVEGA
401: TDMASAAGGH APGMEQNEVC DPMSLPDVEK LNASYMAVHG SAMLGRHLWL KTSPLSQSA
001: MAMMHPPQPP QGSYHHPQTL EEVRTLWIGD LQYWVDENYL TSCFSQTGEL VSVKVIRNKI TGQPEGYGFI EFISHAAAER TLQTYNGTQM PGTELTFRLN
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKAV YPVTVPSAVA APVQAYVAPP ESDVTCTTIS VANLDQNVTE EELKKAFSQL GEVIYVKIPA TKGYGYVQFK TRPSAEEAVQ RMQGQVIGQQ
301: AVRISWSKNP GQDGWVTQAD PNQWNGYYGY GQGYDAYAYG ATQDPSVYAY GGYGYPQYPQ QGEGTQDISN SAAGGVAGAE QELYDPLATP DVDKLNAAYL
401: SVHASAILGR PMWQRTSSLT SQLGK
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKAV YPVTVPSAVA APVQAYVAPP ESDVTCTTIS VANLDQNVTE EELKKAFSQL GEVIYVKIPA TKGYGYVQFK TRPSAEEAVQ RMQGQVIGQQ
301: AVRISWSKNP GQDGWVTQAD PNQWNGYYGY GQGYDAYAYG ATQDPSVYAY GGYGYPQYPQ QGEGTQDISN SAAGGVAGAE QELYDPLATP DVDKLNAAYL
401: SVHASAILGR PMWQRTSSLT SQLGK
Arabidopsis Description
RBP47B'Polyadenylate-binding protein RBP47B' [Source:UniProtKB/Swiss-Prot;Acc:Q8VXZ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.