Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G014200.1 | Wheat | nucleus | 99.04 | 99.04 |
| TraesCS4B01G289600.1 | Wheat | nucleus | 98.8 | 89.54 |
| TraesCS4D01G288600.1 | Wheat | nucleus | 98.08 | 89.28 |
| Os03t0174100-02 | Rice | nucleus | 86.54 | 86.54 |
| EER95414 | Sorghum | nucleus | 84.13 | 84.34 |
| GSMUA_Achr8P31320_001 | Banana | nucleus | 67.07 | 69.75 |
| PGSC0003DMT400018998 | Potato | nucleus | 69.71 | 69.38 |
| Solyc11g065880.1.1 | Tomato | nucleus | 69.47 | 69.3 |
| VIT_06s0004g02040.t01 | Wine grape | nucleus | 73.8 | 68.99 |
| KRH23136 | Soybean | cytosol | 67.79 | 67.3 |
| KRH29709 | Soybean | cytosol | 63.7 | 66.08 |
| AT5G19350.1 | Thale cress | cytosol | 66.83 | 65.41 |
| KRH24702 | Soybean | nucleus | 62.98 | 65.34 |
| Bra002230.1-P | Field mustard | nucleus | 64.42 | 63.96 |
| CDX92537 | Canola | nucleus | 64.42 | 63.96 |
| CDY13992 | Canola | nucleus | 64.18 | 63.72 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 64.18 | 62.09 |
| KRH10201 | Soybean | mitochondrion, nucleus, plastid | 43.75 | 61.9 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 63.94 | 61.86 |
| Bra006502.1-P | Field mustard | nucleus | 63.94 | 61.86 |
| HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 47.84 | 45.96 |
| HORVU7Hr1G066510.3 | Barley | plastid | 47.36 | 45.08 |
| HORVU2Hr1G106810.1 | Barley | nucleus | 49.52 | 44.59 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 43.99 | 43.88 |
| HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 42.79 | 41.69 |
| Zm00001d027869_P002 | Maize | nucleus | 64.18 | 34.99 |
| HORVU2Hr1G046380.2 | Barley | nucleus | 36.54 | 34.47 |
| HORVU2Hr1G064650.4 | Barley | nucleus | 27.88 | 34.02 |
| HORVU4Hr1G033990.7 | Barley | golgi, nucleus | 22.6 | 21.41 |
| HORVU2Hr1G031260.2 | Barley | nucleus, plastid | 22.84 | 19.11 |
| HORVU7Hr1G052090.3 | Barley | nucleus | 22.12 | 18.62 |
| HORVU1Hr1G038240.1 | Barley | nucleus | 15.38 | 17.39 |
| HORVU2Hr1G087390.3 | Barley | cytosol, mitochondrion, nucleus | 23.32 | 15.88 |
| HORVU4Hr1G059070.1 | Barley | cytosol | 21.88 | 13.91 |
| HORVU7Hr1G063970.1 | Barley | cytosol, nucleus, plastid | 23.56 | 13.69 |
| HORVU5Hr1G050560.1 | Barley | plastid | 22.84 | 13.53 |
| HORVU2Hr1G122920.2 | Barley | nucleus | 19.47 | 8.0 |
| HORVU2Hr1G123110.1 | Barley | nucleus, plastid | 18.75 | 7.34 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | EMBL:AK362249 | UniProt:F2DED2 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | EnsemblPlantsGene:HORVU4Hr1G075700 | EnsemblPlants:HORVU4Hr1G075700.5 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 | PANTHER:PTHR43955:SF8 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002005F71 | SEG:seg |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DED2]
Coordinates
chrchr4H:-:599001341..599006509
Molecular Weight (calculated)
45698.5 Da
IEP (calculated)
5.104
GRAVY (calculated)
-0.411
Length
416 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMAGPYHQP TTLEEVRTLW IGDLQYWADE NYLYGCFAHT GEVQSVKLIR NKLSGLPEGY GFIEFISHEA AEKVLQAYNG AQMPGTELTF RLNWASFSSG
101: EKRPDAGPDH SIFVGDLAPD VTDYLLQETF RVNYSSVRGA KVVTDPNTGR SKGYGFVKFA DENEKTRAMS EMNGVYCSTR PMRISAAIPK KSSGSQLQYG
201: AAKAMYPATA YAIPQAQTVL PDSDLTNTTI FIGNLDPNVT EEELRQICVQ FGELIYVKIP VGKGCGFVQY ASRASAEEAV QRLHGTVIGQ QVVRLSWGRS
301: PANKQDQSAA WGQQADPNQW SAYYSYGYDP YGYPQDPSYA YGAYAGYAQY PQQVEGATDM ASAAGGHAPG MEQNEVYDPM SLPDVEKLNA SYMAVHGSAV
401: LGRHLWLKTS PLSQSA
101: EKRPDAGPDH SIFVGDLAPD VTDYLLQETF RVNYSSVRGA KVVTDPNTGR SKGYGFVKFA DENEKTRAMS EMNGVYCSTR PMRISAAIPK KSSGSQLQYG
201: AAKAMYPATA YAIPQAQTVL PDSDLTNTTI FIGNLDPNVT EEELRQICVQ FGELIYVKIP VGKGCGFVQY ASRASAEEAV QRLHGTVIGQ QVVRLSWGRS
301: PANKQDQSAA WGQQADPNQW SAYYSYGYDP YGYPQDPSYA YGAYAGYAQY PQQVEGATDM ASAAGGHAPG MEQNEVYDPM SLPDVEKLNA SYMAVHGSAV
401: LGRHLWLKTS PLSQSA
001: MAMMHPPQPP QGSYHHPQTL EEVRTLWIGD LQYWVDENYL TSCFSQTGEL VSVKVIRNKI TGQPEGYGFI EFISHAAAER TLQTYNGTQM PGTELTFRLN
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKAV YPVTVPSAVA APVQAYVAPP ESDVTCTTIS VANLDQNVTE EELKKAFSQL GEVIYVKIPA TKGYGYVQFK TRPSAEEAVQ RMQGQVIGQQ
301: AVRISWSKNP GQDGWVTQAD PNQWNGYYGY GQGYDAYAYG ATQDPSVYAY GGYGYPQYPQ QGEGTQDISN SAAGGVAGAE QELYDPLATP DVDKLNAAYL
401: SVHASAILGR PMWQRTSSLT SQLGK
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKAV YPVTVPSAVA APVQAYVAPP ESDVTCTTIS VANLDQNVTE EELKKAFSQL GEVIYVKIPA TKGYGYVQFK TRPSAEEAVQ RMQGQVIGQQ
301: AVRISWSKNP GQDGWVTQAD PNQWNGYYGY GQGYDAYAYG ATQDPSVYAY GGYGYPQYPQ QGEGTQDISN SAAGGVAGAE QELYDPLATP DVDKLNAAYL
401: SVHASAILGR PMWQRTSSLT SQLGK
Arabidopsis Description
RBP47B'Polyadenylate-binding protein RBP47B' [Source:UniProtKB/Swiss-Prot;Acc:Q8VXZ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.