Factsheet for GSMUA_Achr8P31320_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95414	Sorghum	nucleus	72.25	69.64
Os03t0174100-02	Rice	nucleus	70.0	67.31
HORVU4Hr1G075700.5	Barley	nucleus	69.75	67.07
TraesCS4A01G014200.1	Wheat	nucleus	69.5	66.83
VIT_06s0004g02040.t01	Wine grape	nucleus	74.0	66.52
PGSC0003DMT400018998	Potato	nucleus	69.0	66.03
Solyc11g065880.1.1	Tomato	nucleus	68.5	65.71
GSMUA_Achr6P29410_001	Banana	nucleus	52.75	64.33
KRH23136	Soybean	cytosol	66.75	63.72
GSMUA_Achr9P24980_001	Banana	cytosol	52.25	63.14
KRH29709	Soybean	cytosol	62.5	62.34
GSMUA_Achr9P15210_001	Banana	nucleus	48.25	61.86
KRH24702	Soybean	nucleus	61.5	61.35
TraesCS4D01G288600.1	Wheat	nucleus	69.5	60.83
TraesCS4B01G289600.1	Wheat	nucleus	69.75	60.78
GSMUA_Achr3P06840_001	Banana	nucleus	47.25	60.58
AT5G19350.1	Thale cress	cytosol	64.25	60.47
CDY13992	Canola	nucleus	62.75	59.9
Bra002230.1-P	Field mustard	nucleus	62.75	59.9
CDX92537	Canola	nucleus	62.0	59.19
GSMUA_Achr6P10190_001	Banana	nucleus	45.75	58.47
CDX88893	Canola	cytosol, nucleus, peroxisome	62.25	57.91
CDX70874	Canola	cytosol, nucleus, peroxisome	62.25	57.91
Bra006502.1-P	Field mustard	nucleus	62.0	57.67
GSMUA_Achr10P...	Banana	nucleus	45.25	57.64
KRH10201	Soybean	mitochondrion, nucleus, plastid	41.0	55.78
GSMUA_Achr8P03580_001	Banana	cytosol, mitochondrion, nucleus	54.0	53.07
GSMUA_Achr10P...	Banana	nucleus	55.0	50.69
GSMUA_Achr3P01720_001	Banana	mitochondrion	48.5	48.14
GSMUA_Achr6P09470_001	Banana	nucleus	16.25	44.22
Zm00001d027869_P002	Maize	nucleus	59.75	31.32
GSMUA_Achr9P14120_001	Banana	nucleus	25.75	25.37
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	27.5	25.35
GSMUA_Achr10P...	Banana	mitochondrion	26.75	25.18
GSMUA_Achr6P11660_001	Banana	mitochondrion	26.25	24.82
GSMUA_Achr11P...	Banana	nucleus	27.0	24.32
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	26.0	20.97
GSMUA_Achr4P00840_001	Banana	cytosol	21.5	17.77
GSMUA_Achr5P20140_001	Banana	nucleus	15.5	16.94
GSMUA_Achr9P00990_001	Banana	cytosol	25.0	15.36
GSMUA_Achr4P20270_001	Banana	cytosol	23.5	14.62
GSMUA_AchrUn_...	Banana	cytosol	23.0	14.11
GSMUA_Achr4P09890_001	Banana	cytosol	23.0	14.11
GSMUA_Achr5P24940_001	Banana	plastid	22.75	13.66
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	20.0	12.35
GSMUA_Achr9P10860_001	Banana	cytosol	21.25	11.89
GSMUA_Achr7P05430_001	Banana	nucleus	23.0	10.18

Protein Annotations

MapMan:16.9.4	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	EnsemblPlantsGene:GSMUA_Achr8G31320_001	EnsemblPlants:GSMUA_Achr8P31320_001	EnsemblPlants:GSMUA_Achr8T31320_001	InterPro:IPR000504	InterPro:IPR012677
UniProt:M0TV84	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF8
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002964EEC	SEG:seg

Description

RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G31320_001]

Coordinates

chr8:+:33027120..33032498

Molecular Weight (calculated)

44518.1 Da

IEP (calculated)

6.432

GRAVY (calculated)

-0.427

Length

400 amino acids

Sequence
(BLAST)

001: MDPSQQQQWV QSHHHQAWAA AAPPTTSSHG YHQPATLEEV RSLWIGDLQY WVDESYLHNC FAHTGEVVSV KIIRNKITGL PEGYGFIEFV SHPAAERILQ
101: TYNGAQMPGT EQTFRLNWAS FGIGERRPDA GPDHSIFVGD LASDVTDYLL QETFRANYPS VRGAKVVTDP NTGRSKGYGF VKFADEMERN RAMTEMNGVY
201: CSSRPMRISA ATPKKTTGLQ QQYPAAKALY PATTYTVAQL PPVPPDNDIT NTTIFVGCLD PNVTEEELKQ ICSQFGDIIY VKIPAGKGCG FVQFVARASA
301: EEAIQKLHGS MIGQQIVRLS WGRSPASKQD PTMAWSQQAD PNQWAGAYYG YGYDAYAYGA SQDPSLYAYG AYAGYGQYPQ QARLTTFYVL FHYLTCTYTY

Best Arabidopsis Sequence Match ( AT5G19350.1 )
(BLAST)

001: MAMMHPPQPP QGSYHHPQTL EEVRTLWIGD LQYWVDENYL TSCFSQTGEL VSVKVIRNKI TGQPEGYGFI EFISHAAAER TLQTYNGTQM PGTELTFRLN
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKAV YPVTVPSAVA APVQAYVAPP ESDVTCTTIS VANLDQNVTE EELKKAFSQL GEVIYVKIPA TKGYGYVQFK TRPSAEEAVQ RMQGQVIGQQ
301: AVRISWSKNP GQDGWVTQAD PNQWNGYYGY GQGYDAYAYG ATQDPSVYAY GGYGYPQYPQ QGEGTQDISN SAAGGVAGAE QELYDPLATP DVDKLNAAYL
401: SVHASAILGR PMWQRTSSLT SQLGK

Arabidopsis Description

RBP47B'Polyadenylate-binding protein RBP47B' [Source:UniProtKB/Swiss-Prot;Acc:Q8VXZ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.