Factsheet for GSMUA_Achr10P09240_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P29410_001	Banana	nucleus	65.9	87.2
GSMUA_Achr9P24980_001	Banana	cytosol	66.36	87.01
GSMUA_Achr8P03580_001	Banana	cytosol, mitochondrion, nucleus	70.05	74.69
OQU91463	Sorghum	nucleus	66.82	70.9
Os03t0569900-01	Rice	nucleus	65.67	70.9
Zm00001d013812_P001	Maize	nucleus	66.13	70.69
GSMUA_Achr9P15210_001	Banana	nucleus	44.93	62.5
GSMUA_Achr3P06840_001	Banana	nucleus	44.24	61.54
GSMUA_Achr6P10190_001	Banana	nucleus	43.09	59.74
GSMUA_Achr10P...	Banana	nucleus	42.4	58.6
Zm00001d009512_P001	Maize	mitochondrion	17.05	56.06
GSMUA_Achr8P31320_001	Banana	nucleus	50.69	55.0
GSMUA_Achr6P09470_001	Banana	nucleus	18.2	53.74
Os07t0516900-01	Rice	plastid	30.88	53.39
TraesCS2B01G247400.4	Wheat	nucleus	56.68	53.02
TraesCS2D01G227900.5	Wheat	nucleus	56.68	53.02
TraesCS2A01G221900.2	Wheat	nucleus	56.68	53.02
Zm00001d018546_P001	Maize	endoplasmic reticulum, extracellular	17.05	52.11
GSMUA_Achr3P01720_001	Banana	mitochondrion	47.0	50.62
KXG36337	Sorghum	nucleus	55.07	50.1
Zm00001d010739_P001	Maize	mitochondrion	14.06	49.19
EER95718	Sorghum	nucleus	40.78	48.9
Zm00001d021633_P006	Maize	nucleus	52.3	48.82
Zm00001d007929_P002	Maize	nucleus	40.09	48.47
TraesCS2D01G266400.1	Wheat	nucleus	38.48	46.91
TraesCS2A01G256500.1	Wheat	nucleus	38.02	46.35
Zm00001d006496_P004	Maize	nucleus	53.46	42.73
HORVU2Hr1G046380.2	Barley	nucleus	43.09	42.4
HORVU2Hr1G064650.4	Barley	nucleus	31.8	40.47
Zm00001d016252_P001	Maize	nucleus	30.88	35.64
Zm00001d017181_P001	Maize	mitochondrion, nucleus, plastid	16.36	26.49
GSMUA_Achr10P...	Banana	mitochondrion	25.58	26.12
GSMUA_Achr6P11660_001	Banana	mitochondrion	25.12	25.77
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	25.12	25.12
GSMUA_Achr9P14120_001	Banana	nucleus	23.04	24.63
GSMUA_Achr11P...	Banana	nucleus	25.12	24.55
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	24.19	21.17
GSMUA_Achr5P20140_001	Banana	nucleus	15.9	18.85
GSMUA_Achr4P00840_001	Banana	cytosol	19.82	17.77
GSMUA_Achr9P00990_001	Banana	cytosol	25.35	16.9
GSMUA_Achr4P20270_001	Banana	cytosol	23.27	15.71
GSMUA_Achr4P09890_001	Banana	cytosol	23.27	15.49
GSMUA_AchrUn_...	Banana	cytosol	23.04	15.34
GSMUA_Achr5P24940_001	Banana	plastid	22.35	14.56
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	19.12	12.81
GSMUA_Achr9P10860_001	Banana	cytosol	20.51	12.45
GSMUA_Achr7P05430_001	Banana	nucleus	22.81	10.95

Protein Annotations

EnsemblPlants:GSMUA_Achr10P09240_001	EnsemblPlants:GSMUA_Achr10T09240_001	EnsemblPlantsGene:GSMUA_Achr10G09240_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR43955	PANTHER:PTHR43955:SF8	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00029603D4	UniProt:M0RGQ0	MapMan:16.9.4	:

Description

Putative Uncharacterized RNA-binding protein C23E6.01c [Source:GMGC_GENE;Acc:GSMUA_Achr10G09240_001]

Coordinates

chr10:+:19153073..19157517

Molecular Weight (calculated)

48376.7 Da

IEP (calculated)

5.417

GRAVY (calculated)

-0.677

Length

434 amino acids

Sequence
(BLAST)

001: MAPPPMEQQP QQWNMMPPQP QYYQAPPAPP MWNQQPSQVP PPVPQLVPQP QPQYQAPAPV PPPQMQYQVP PPAQAPPMAP QPASSDEIRT LWVGDLQYWM
101: DENYLYSCFV HTGEVVSVKV IRNKQTGQSE GYGFIEFVSR VAADRILQTY NGQIMPNSEQ AFRMNWATCG AGEKHGDGAD YTIFVGDLAA DVTDYLLQET
201: FKSHYTSVKG AKVVTDRLTG RSKGYGFVKF GDLNEQTRAM TEMNGVYCST RPMRIGAAAN KKSLGTQQQY SANASFQTGQ GDESESDPNN TTIFVGGLDP
301: NITDDHLRQV FSAYGEIVYV KIPVGKRCGF VQFANRASAE EALRMLNGTL LGGQSIRLSW GRSPANKQPQ QDPNQWNGSY YGYTQSYDTY GYAPPQDPNM
401: YAYATYPGYG NYQQPQQQAQ PPPQLYLKCC MSLQ

Best Arabidopsis Sequence Match ( AT1G11650.2 )
(BLAST)

001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY

Arabidopsis Description

RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.