Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d009512_P001 | Maize | mitochondrion | 83.1 | 89.39 |
| Zm00001d010739_P001 | Maize | mitochondrion | 69.01 | 79.03 |
| Zm00001d021149_P001 | Maize | cytosol | 50.0 | 43.03 |
| Zm00001d017181_P001 | Maize | mitochondrion, nucleus, plastid | 68.31 | 36.19 |
| Os07t0516900-01 | Rice | plastid | 59.15 | 33.47 |
| Zm00001d016252_P001 | Maize | nucleus | 81.69 | 30.85 |
| Zm00001d021633_P006 | Maize | nucleus | 80.99 | 24.73 |
| GSMUA_Achr9P24980_001 | Banana | cytosol | 56.34 | 24.17 |
| GSMUA_Achr6P29410_001 | Banana | nucleus | 50.7 | 21.95 |
| TraesCS2B01G247400.4 | Wheat | nucleus | 65.49 | 20.04 |
| TraesCS2D01G227900.5 | Wheat | nucleus | 65.49 | 20.04 |
| TraesCS2A01G221900.2 | Wheat | nucleus | 65.49 | 20.04 |
| Zm00001d013812_P001 | Maize | nucleus | 56.34 | 19.7 |
| Zm00001d006496_P004 | Maize | nucleus | 73.94 | 19.34 |
| Zm00001d007929_P002 | Maize | nucleus | 48.59 | 19.22 |
| Zm00001d026528_P001 | Maize | plastid | 28.87 | 18.64 |
| GSMUA_Achr8P03580_001 | Banana | cytosol, mitochondrion, nucleus | 52.11 | 18.18 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 51.41 | 17.22 |
| GSMUA_Achr10P... | Banana | nucleus | 52.11 | 17.05 |
| Zm00001d020748_P002 | Maize | plasma membrane | 51.41 | 16.86 |
| Zm00001d050838_P001 | Maize | plastid | 50.7 | 16.74 |
| Zm00001d049416_P001 | Maize | extracellular, nucleus | 53.52 | 16.67 |
| Zm00001d026346_P002 | Maize | extracellular | 50.0 | 16.59 |
| Zm00001d025551_P002 | Maize | plastid | 52.11 | 16.37 |
| Zm00001d002244_P003 | Maize | nucleus | 49.3 | 15.62 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 49.3 | 14.77 |
| HORVU2Hr1G046380.2 | Barley | nucleus | 45.07 | 14.51 |
| Zm00001d027869_P002 | Maize | nucleus | 52.82 | 9.83 |
| Zm00001d031525_P004 | Maize | nucleus | 30.99 | 9.44 |
| Zm00001d048824_P004 | Maize | nucleus | 29.58 | 9.4 |
| Zm00001d014094_P002 | Maize | extracellular, plasma membrane | 22.54 | 8.96 |
| Zm00001d032807_P001 | Maize | nucleus | 22.54 | 8.91 |
| Zm00001d049759_P003 | Maize | nucleus | 25.35 | 7.86 |
| Zm00001d046487_P001 | Maize | cytosol | 22.54 | 4.98 |
| Zm00001d047790_P001 | Maize | plastid | 23.24 | 4.49 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 19.72 | 4.29 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 19.01 | 4.14 |
| Zm00001d005276_P007 | Maize | cytosol | 18.31 | 3.98 |
| Zm00001d019824_P004 | Maize | cytosol | 18.31 | 3.96 |
| Zm00001d026522_P001 | Maize | nucleus | 2.82 | 1.64 |
Protein Annotations
| EnsemblPlants:Zm00001d018546_P001 | EnsemblPlants:Zm00001d018546_T001 | EnsemblPlantsGene:Zm00001d018546 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR43955 | PANTHER:PTHR43955:SF8 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:AQK76447.1 |
| SUPFAM:SSF54928 | UniParc:UPI0002209904 | UniProt:A0A1D6HQ97 | MapMan:16.9.4 | : | : |
Description
Polyadenylate-binding protein RBP45C
Coordinates
chr5:-:222767431..222768142
Molecular Weight (calculated)
15780.8 Da
IEP (calculated)
6.677
GRAVY (calculated)
-0.079
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MHMTDFIFVD LILSSNCILL FVKIIRNKQT GHSEGYGFIE FSSRAAAEHT LMNFNGQMMS NVEMTFKLNW ASASTGDKRG DSGSDHTIFV GDLAHGVTDS
101: MLEDVFRAKY PSVRGANVVV DRMTGWPKGY GFVRFGDLNN AL
101: MLEDVFRAKY PSVRGANVVV DRMTGWPKGY GFVRFGDLNN AL
001: MQTPNNNGST DSVLPPTSAG TTPPPPLQQS TPPPQQQQQQ QWQQQQQWMA AMQQYPAAAM AMMQQQQMMM YPHPQYAPYN QAAYQQHPQF QYAAYQQQQQ
101: QHHQSQQQPR GGSGGDDVKT LWVGDLLHWM DETYLHTCFS HTNEVSSVKV IRNKQTCQSE GYGFVEFLSR SAAEEALQSF SGVTMPNAEQ PFRLNWASFS
201: TGEKRASENG PDLSIFVGDL APDVSDAVLL ETFAGRYPSV KGAKVVIDSN TGRSKGYGFV RFGDENERSR AMTEMNGAFC SSRQMRVGIA TPKRAAAYGQ
301: QNGSQALTLA GGHGGNGSMS DGESNNSTIF VGGLDADVTE EDLMQPFSDF GEVVSVKIPV GKGCGFVQFA NRQSAEEAIG NLNGTVIGKN TVRLSWGRSP
401: NKQWRSDSGN QWNGGYSRGQ GYNNGYANQD SNMYATAAAA VPGAS
101: QHHQSQQQPR GGSGGDDVKT LWVGDLLHWM DETYLHTCFS HTNEVSSVKV IRNKQTCQSE GYGFVEFLSR SAAEEALQSF SGVTMPNAEQ PFRLNWASFS
201: TGEKRASENG PDLSIFVGDL APDVSDAVLL ETFAGRYPSV KGAKVVIDSN TGRSKGYGFV RFGDENERSR AMTEMNGAFC SSRQMRVGIA TPKRAAAYGQ
301: QNGSQALTLA GGHGGNGSMS DGESNNSTIF VGGLDADVTE EDLMQPFSDF GEVVSVKIPV GKGCGFVQFA NRQSAEEAIG NLNGTVIGKN TVRLSWGRSP
401: NKQWRSDSGN QWNGGYSRGQ GYNNGYANQD SNMYATAAAA VPGAS
Arabidopsis Description
ATRBP47ARNA-binding protein 47A [Source:TAIR;Acc:AT1G49600]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.