Factsheet for GSMUA_Achr9P24980_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P29410_001	Banana	nucleus	88.82	89.63
GSMUA_Achr8P03580_001	Banana	cytosol, mitochondrion, nucleus	85.8	69.78
GSMUA_Achr10P...	Banana	nucleus	87.01	66.36
GSMUA_Achr9P15210_001	Banana	nucleus	59.52	63.14
GSMUA_Achr3P06840_001	Banana	nucleus	58.31	61.86
Os03t0569900-01	Rice	nucleus	73.72	60.7
GSMUA_Achr6P10190_001	Banana	nucleus	56.8	60.06
GSMUA_Achr10P...	Banana	nucleus	56.5	59.55
Zm00001d013812_P001	Maize	nucleus	72.81	59.36
Zm00001d009512_P001	Maize	mitochondrion	23.57	59.09
OQU91463	Sorghum	nucleus	72.81	58.92
Zm00001d018546_P001	Maize	endoplasmic reticulum, extracellular	24.17	56.34
Zm00001d010739_P001	Maize	mitochondrion	19.64	52.42
GSMUA_Achr8P31320_001	Banana	nucleus	63.14	52.25
TraesCS2B01G247400.4	Wheat	nucleus	68.58	48.92
TraesCS2A01G221900.2	Wheat	nucleus	68.58	48.92
TraesCS2D01G227900.5	Wheat	nucleus	68.28	48.71
Os07t0516900-01	Rice	plastid	35.35	46.61
KXG36337	Sorghum	nucleus	65.56	45.49
Zm00001d021633_P006	Maize	nucleus	62.84	44.73
GSMUA_Achr3P01720_001	Banana	mitochondrion	54.38	44.66
EER95718	Sorghum	nucleus	47.73	43.65
Zm00001d007929_P002	Maize	nucleus	47.13	43.45
TraesCS2D01G266400.1	Wheat	nucleus	46.53	43.26
HORVU2Hr1G046380.2	Barley	nucleus	57.4	43.08
TraesCS2A01G256500.1	Wheat	nucleus	45.92	42.7
Zm00001d006496_P004	Maize	nucleus	63.14	38.49
GSMUA_Achr6P09470_001	Banana	nucleus	16.31	36.73
HORVU2Hr1G064650.4	Barley	nucleus	37.76	36.66
Zm00001d016252_P001	Maize	nucleus	34.74	30.59
Zm00001d017181_P001	Maize	mitochondrion, nucleus, plastid	19.64	24.25
GSMUA_Achr10P...	Banana	mitochondrion	29.61	23.06
GSMUA_Achr9P14120_001	Banana	nucleus	28.1	22.91
GSMUA_Achr6P11660_001	Banana	mitochondrion	28.7	22.46
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	29.0	22.12
GSMUA_Achr11P...	Banana	nucleus	29.0	21.62
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	27.79	18.55
GSMUA_Achr5P20140_001	Banana	nucleus	18.13	16.39
GSMUA_Achr4P00840_001	Banana	cytosol	21.75	14.88
GSMUA_Achr9P00990_001	Banana	cytosol	27.79	14.13
GSMUA_Achr4P20270_001	Banana	cytosol	26.89	13.84
GSMUA_AchrUn_...	Banana	cytosol	27.19	13.8
GSMUA_Achr4P09890_001	Banana	cytosol	26.28	13.34
GSMUA_Achr5P24940_001	Banana	plastid	26.28	13.06
GSMUA_Achr9P10860_001	Banana	cytosol	24.77	11.47
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	22.05	11.27
GSMUA_Achr7P05430_001	Banana	nucleus	25.98	9.51

Protein Annotations

EnsemblPlants:GSMUA_Achr9P24980_001	EnsemblPlants:GSMUA_Achr9T24980_001	EnsemblPlantsGene:GSMUA_Achr9G24980_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR43955	PANTHER:PTHR43955:SF8	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000294B0C7	UniProt:M0U3A5	MapMan:16.9.4	:

Description

Putative Uncharacterized RNA-binding protein C23E6.01c [Source:GMGC_GENE;Acc:GSMUA_Achr9G24980_001]

Coordinates

chr9:-:29603734..29611453

Molecular Weight (calculated)

36594.5 Da

IEP (calculated)

6.771

GRAVY (calculated)

-0.656

Length

331 amino acids

Sequence
(BLAST)

001: MDENYLYSCF VHTGEVLSVK IIRNKLNGQS EGYGFIEFVS RAAADRVLQT FNGQVMPNTE QAFRLNWASC GAGEKRGDGA DYTIFVGDLA ADVTDYLLQE
101: TFKNHYPSVK GAKVVTDRLT GRSKGYGFVK FGDLNEQTRA MTEMNGLYCS TRPMRIGAAA NKKTLGAQQQ YPANASYQTT QGAESENDPN NTTIFVGGLD
201: PNVTDDHLRQ VFGPYGEIVY VKIPVGKRCG FVQFANRANA EEALRALNGT SLGGQNIRLS WGRSPTNKQP QQDPNQWNGG YYGYTQSYDA YGYAPPQDPN
301: MYAYAAYPGY GNYQQQQPQQ PPQVRAVGDV N

Best Arabidopsis Sequence Match ( AT5G54900.1 )
(BLAST)

001: MQQPPSNAAG AGQIPSGQQH LWMMMQQQQQ QQQMQLSAAP LGQHQYGIGS QNPGSASDVK SLWIGDLQQW MDENYIMSVF AQSGEATSAK VIRNKLTGQS
101: EGYGFIEFVS HSVAERVLQT YNGAPMPSTE QTFRLNWAQA GAGEKRFQTE GPDHTIFVGD LAPEVTDYML SDTFKNVYGS VKGAKVVLDR TTGRSKGYGF
201: VRFADENEQM RAMTEMNGQY CSTRPMRIGP AANKNALPMQ PAMYQNTQGA NAGDNDPNNT TIFVGGLDAN VTDDELKSIF GQFGELLHVK IPPGKRCGFV
301: QYANKASAEH ALSVLNGTQL GGQSIRLSWG RSPNKQSDQA QWNGGGYYGY PPQPQGGYGY AAQPPTQDPN AYYGGYTGYG NYQQQRQ

Arabidopsis Description

RBP45APolyadenylate-binding protein RBP45A [Source:UniProtKB/Swiss-Prot;Acc:Q9FPJ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.