CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006496_P004	Maize	nucleus	88.26	77.53
TraesCS2D01G227900.5	Wheat	nucleus	70.23	72.2
TraesCS2B01G247400.4	Wheat	nucleus	70.02	71.98
TraesCS2A01G221900.2	Wheat	nucleus	69.6	71.55
Os07t0516900-01	Rice	plastid	35.22	66.93
GSMUA_Achr9P24980_001	Banana	cytosol	45.49	65.56
GSMUA_Achr6P29410_001	Banana	nucleus	44.86	65.24
OQU91463	Sorghum	nucleus	52.2	60.88
KXG27152	Sorghum	nucleus	50.94	55.99
GSMUA_Achr10P...	Banana	nucleus	50.1	55.07
KXG24662	Sorghum	nucleus	51.99	54.39
GSMUA_Achr8P03580_001	Banana	cytosol, mitochondrion, nucleus	46.33	54.3
HORVU2Hr1G046380.2	Barley	nucleus	46.12	49.89
EER95414	Sorghum	nucleus	42.14	48.43
KXG35789	Sorghum	nucleus	42.56	46.35
EES10898	Sorghum	nucleus	40.67	45.86
EER95718	Sorghum	nucleus	34.38	45.3
EES05289	Sorghum	plastid	39.83	43.68
EES15356	Sorghum	nucleus	23.9	25.5
EES08860	Sorghum	nucleus	22.64	24.49
EER94133	Sorghum	nucleus	12.79	17.18
EER89984	Sorghum	plastid	19.29	14.58
KXG35258	Sorghum	cytosol	18.66	13.57
EES12460	Sorghum	plastid	18.87	13.55
KXG40160	Sorghum	nucleus	17.19	11.37
KXG27463	Sorghum	nucleus	20.96	9.29

Protein Annotations

MapMan:16.9.4	Gene3D:3.30.70.330	UniProt:A0A1B6QEI9	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	EnsemblPlants:KXG36337	ProteinID:KXG36337	ProteinID:KXG36337.1
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF8	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3002G318600	SUPFAM:SSF54928	UniParc:UPI00081AC913	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:69083444..69088463

Molecular Weight (calculated)

53210.4 Da

IEP (calculated)

6.040

GRAVY (calculated)

-1.016

Length

477 amino acids

Sequence
(BLAST)

001: MQPPHQPPMN GQHGPPPPQG SGVPTPPQQQ APAPPYYQQQ APPPPQYYQQ APPQPWGQQQ QYAPPPQQYA PPPQHYAPPP QQQYAPPPPQ QYAPPPPQYA
101: QPPQYGTTPG TGEVRTLWIG DLQYWMDENY LHYTAFAPVC QQIASVKIIR NKQTGHSEGY GFIEFYSQAA AEHTLMNFNG QMMPNVEMAY KLNWASGSAG
201: DKRGDSGSDH TIFVGDLAPD VTDSMLEDMF RANYPSVRGA KVVVDRITGR PKGYGFVRFG DLNEQARAMT EMNGMMLSTR QIRIGAAANK KNMDAQQTYA
301: SNGAYQSSQG ISSENDPNNT TVFVGGLDSN VNEEYLRQIF TPHGEISYVK IPVGKHCGFV QFTSRSCAEE AIQMLNGSQI GGQKVRLSWG RTQNRQASQQ
401: DANSQYNGNS YYGYRQQGYE GYGYAAPNTQ DPSMQNYYGY PGYGNYEQQQ QQQQSTQEQQ QQPPPAQEQQ QQQPPQQ

Best Arabidopsis Sequence Match ( AT1G11650.2 )
(BLAST)

001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY

Arabidopsis Description

RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.