CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020748_P002	Maize	plasma membrane	93.61	94.69
TraesCS5B01G241400.1	Wheat	nucleus	72.37	92.69
TraesCS5D01G250100.1	Wheat	nucleus	72.15	92.4
TraesCS5A01G243500.1	Wheat	nucleus	72.15	92.4
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	89.27	92.22
HORVU5Hr1G069180.3	Barley	nucleus, peroxisome, plastid	87.44	88.45
GSMUA_Achr9P15210_001	Banana	nucleus	60.5	84.94
GSMUA_Achr3P06840_001	Banana	nucleus	58.22	81.73
Os09t0462700-01	Rice	mitochondrion, nucleus, plastid	75.34	74.83
KRH05723	Soybean	nucleus	62.56	66.34
VIT_18s0001g11080.t01	Wine grape	nucleus	63.24	66.27
EES10898	Sorghum	nucleus	63.93	66.19
PGSC0003DMT400020621	Potato	nucleus	59.59	65.91
KRH61258	Soybean	nucleus	60.73	65.04
KRH15315	Soybean	nucleus	62.33	64.24
KRH51956	Soybean	nucleus	58.68	62.53
Bra027446.1-P	Field mustard	cytosol	45.66	62.5
EES05289	Sorghum	plastid	61.64	62.07
Solyc04g079310.2.1	Tomato	nucleus	61.42	59.65
VIT_03s0063g00850.t01	Wine grape	nucleus	55.71	58.94
AT1G47500.1	Thale cress	nucleus	55.71	56.22
CDY06734	Canola	mitochondrion	39.04	56.07
AT1G47490.1	Thale cress	nucleus	54.79	55.56
Solyc01g108500.2.1	Tomato	nucleus	51.6	54.72
KRH50251	Soybean	nucleus	53.65	54.52
CDY52067	Canola	nucleus	52.05	54.42
Bra018813.1-P	Field mustard	mitochondrion, nucleus	48.4	54.36
KRH71168	Soybean	nucleus	53.42	54.29
CDX95176	Canola	nucleus	51.83	54.18
PGSC0003DMT400066648	Potato	nucleus	51.83	54.05
Solyc10g050860.1.1	Tomato	nucleus	52.05	53.27
OQU91463	Sorghum	nucleus	48.4	51.83
CDY16528	Canola	nucleus	49.54	51.18
CDY32840	Canola	nucleus	48.86	50.83
CDY28101	Canola	nucleus	49.77	50.82
CDY50959	Canola	nucleus	49.77	50.7
AT3G19130.1	Thale cress	nucleus	50.23	50.57
CDY29341	Canola	nucleus	48.17	50.36
CDY22988	Canola	nucleus	47.95	50.0
CDX92304	Canola	nucleus	48.17	49.76
CDY68866	Canola	nucleus	47.03	49.64
Bra022389.1-P	Field mustard	nucleus	48.17	49.53
CDX82310	Canola	nucleus	46.58	49.51
Bra001735.1-P	Field mustard	nucleus	46.58	49.51
CDY18570	Canola	nucleus	48.86	49.31
CDX99265	Canola	nucleus	47.72	49.29
CDX95462	Canola	nucleus	48.63	49.08
Bra040663.1-P	Field mustard	nucleus	40.64	47.85
KXG27152	Sorghum	nucleus	47.26	47.7
EER95414	Sorghum	nucleus	44.98	47.47
AT1G49600.3	Thale cress	nucleus	47.49	46.22
Bra037538.1-P	Field mustard	nucleus	41.78	45.41
KXG24662	Sorghum	nucleus	46.8	44.96
KXG36337	Sorghum	nucleus	46.35	42.56
EER95718	Sorghum	nucleus	34.02	41.16
Bra014216.1-P	Field mustard	nucleus	42.24	32.34
EES15356	Sorghum	nucleus	23.97	23.49
EES08860	Sorghum	nucleus	22.83	22.68
EER94133	Sorghum	nucleus	14.38	17.75
EER89984	Sorghum	plastid	21.23	14.74
KXG35258	Sorghum	cytosol	20.55	13.72
EES12460	Sorghum	plastid	20.78	13.7
KXG40160	Sorghum	nucleus	20.55	12.48
KXG27463	Sorghum	nucleus	21.46	8.74

Protein Annotations

MapMan:16.9.4	Gene3D:3.30.70.330	UniProt:A0A1B6QCZ3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	EnsemblPlants:KXG35789	ProteinID:KXG35789	ProteinID:KXG35789.1
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF5	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3002G228900	SUPFAM:SSF54928	UniParc:UPI0003C6C24E	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:62010091..62014237

Molecular Weight (calculated)

46948.7 Da

IEP (calculated)

7.142

GRAVY (calculated)

-0.436

Length

438 amino acids

Sequence
(BLAST)

001: MQAAAVNGAG DVQKPHHHHQ QQPVVVGAPP PPAAVVPSHW VAMPFAPPPG AAAMVMQPHQ MAPAPPHQFA AAHFVPFHAV APPPPRAAPV PAVALGSPAP
101: HQAGHEENKT IWVGDLHYWM DENYLHSCFG YTGEVVAIKV IRNKQTGQSE GYGFVEFYSH AAAEKVLEGF SGHIMPNTDQ PFRLNWASFS MGDRRSDVAS
201: DHSIFVGDLA SDVNDATLLE AFSSRYSSVK GAKVVIDANT GRSKGYGFVR FGDDSEKTHA MTEMNGVYCS SRPMRIGPAT PRKSSGTSGS NGSSARSDGG
301: DLTNTTVFVG GLDPNVSEED LRQTFSQYGE ISSVKIPVGK QCGFVQFAQR KNAEDALQGL NGSTIGKQTV RLSWGRNPAN KQFRGDNGNQ WNNGGMYYAA
401: SPFYNGYGYP AAPFPDPGMY AAPAYGAYPF YGNQQQVS

Best Arabidopsis Sequence Match ( AT1G47490.1 )
(BLAST)

001: MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS

Arabidopsis Description

RBP47CPolyadenylate-binding protein RBP47C [Source:UniProtKB/Swiss-Prot;Acc:Q9SX79]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.